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The map label for this gene is torR [H]

Identifier: 126175417

GI number: 126175417

Start: 3770259

End: 3770969

Strand: Reverse

Name: torR [H]

Synonym: Sbal_3217

Alternate gene names: 126175417

Gene position: 3770969-3770259 (Counterclockwise)

Preceding gene: 126175419

Following gene: 126175415

Centisome position: 73.55

GC content: 48.38

Gene sequence:

>711_bases
ATGGCTTATAGTGTGCTCGTTGTCGATGATGAAGCGGTTATTCGTGCGCGATTGAAGGGATATTTTGAAAAGGAAGGTTA
TCGCGTCGTTGAAGCTGCCGATGGCGAGCAAATGTGGTACGAATTTAATCGCCAACATATCGATTTGATCATGCTCGATA
TCAATTTGCCCGGTATCGATGGTTTGAGCCTGACCCGTGAGCTGCGCAGTCGCTCCCATGTGGGCATCATTCTGGTGTCT
GGGCGGGATGAATCTATCGACAAAATCGTTGGTCTCGAAATGGGCGCTGATGATTATGTGACTAAACCTTTCGAGCTGAG
GGAGTTGCTGGTTAGGGTAAAAAACCTCCTGTGGCGGATTTCCCTTGTGAAGCAAGCTGAGCTGGCGGTCGCCGAAGAAT
TATCTCAACCGGACGATGTGATCAGTTTCGAAGGTTATCAACTCGAACTCAACAGCCGCAAATTACGCCATGGTGATGCA
TTGATCAAACTCACCAAAGCGGAATTCGAGCTACTGGCCGCATTTGCCCTGCATCCGCAGCAAGTCTTATCCCGCGAGCG
TTTAATGCAGCAAACCAGCCACCGCAATCTGGATGTCAATGACAGAACGATCGATGTGATCATTCGCCGCCTTCGCAATA
AACTCGACACTGAATTGTTTGTCACTATTCATGGCGAAGGCTATTTATTTGCCGCTAAAGTGGACGATTAA

Upstream 100 bases:

>100_bases
GTTCAATAAAGCTACCGAGATCGCATATTTAACCTTTCACGCATATGCAAATATGAAAAAGTATGAATAATTCACTTAAG
TAAAATAAGAGAAATTGAAA

Downstream 100 bases:

>100_bases
TGGAGTTAGGTCGCACTTGGTACAGAGGGTAAAAGTCGGCTTCAGCTAGGCTGAAATCTAATTGGGACAAAGTGTTAGAG
GATGATGTTCGCTTGATGAT

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWYEFNRQHIDLIMLDINLPGIDGLSLTRELRSRSHVGIILVS
GRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAELAVAEELSQPDDVISFEGYQLELNSRKLRHGDA
LIKLTKAEFELLAAFALHPQQVLSRERLMQQTSHRNLDVNDRTIDVIIRRLRNKLDTELFVTIHGEGYLFAAKVDD

Sequences:

>Translated_236_residues
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWYEFNRQHIDLIMLDINLPGIDGLSLTRELRSRSHVGIILVS
GRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAELAVAEELSQPDDVISFEGYQLELNSRKLRHGDA
LIKLTKAEFELLAAFALHPQQVLSRERLMQQTSHRNLDVNDRTIDVIIRRLRNKLDTELFVTIHGEGYLFAAKVDD
>Mature_235_residues
AYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWYEFNRQHIDLIMLDINLPGIDGLSLTRELRSRSHVGIILVSG
RDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRISLVKQAELAVAEELSQPDDVISFEGYQLELNSRKLRHGDAL
IKLTKAEFELLAAFALHPQQVLSRERLMQQTSHRNLDVNDRTIDVIIRRLRNKLDTELFVTIHGEGYLFAAKVDD

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=238, Percent_Identity=53.781512605042, Blast_Score=239, Evalue=1e-64,
Organism=Escherichia coli, GI1790863, Length=238, Percent_Identity=42.436974789916, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=41.025641025641, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1786599, Length=240, Percent_Identity=37.0833333333333, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1788394, Length=234, Percent_Identity=35.042735042735, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1787375, Length=232, Percent_Identity=35.3448275862069, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786911, Length=232, Percent_Identity=34.051724137931, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790860, Length=231, Percent_Identity=32.9004329004329, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI87082012, Length=232, Percent_Identity=31.4655172413793, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1786784, Length=232, Percent_Identity=33.1896551724138, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI2367329, Length=233, Percent_Identity=33.4763948497854, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=30.5084745762712, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790552, Length=230, Percent_Identity=28.2608695652174, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789402, Length=231, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788550, Length=122, Percent_Identity=33.6065573770492, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788713, Length=114, Percent_Identity=34.2105263157895, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27121; Mature: 26989

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWYEFNRQHIDLIMLDINLPGID
CEEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEEEEEEECCCCCC
GLSLTRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRI
CHHHHHHHHCCCCEEEEEECCCCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKQAELAVAEELSQPDDVISFEGYQLELNSRKLRHGDALIKLTKAEFELLAAFALHPQ
HHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCHH
QVLSRERLMQQTSHRNLDVNDRTIDVIIRRLRNKLDTELFVTIHGEGYLFAAKVDD
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECC
>Mature Secondary Structure 
AYSVLVVDDEAVIRARLKGYFEKEGYRVVEAADGEQMWYEFNRQHIDLIMLDINLPGID
EEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEEEEEEECCCCCC
GLSLTRELRSRSHVGIILVSGRDESIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRI
CHHHHHHHHCCCCEEEEEECCCCCCHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKQAELAVAEELSQPDDVISFEGYQLELNSRKLRHGDALIKLTKAEFELLAAFALHPQ
HHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCHH
QVLSRERLMQQTSHRNLDVNDRTIDVIIRRLRNKLDTELFVTIHGEGYLFAAKVDD
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]