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The map label for this gene is yqgF [C]

Identifier: 126175222

GI number: 126175222

Start: 3545287

End: 3545712

Strand: Direct

Name: yqgF [C]

Synonym: Sbal_3020

Alternate gene names: 126175222

Gene position: 3545287-3545712 (Clockwise)

Preceding gene: 126175221

Following gene: 126175227

Centisome position: 69.14

GC content: 45.77

Gene sequence:

>426_bases
ATGAATTCGAAAACCGTATTAGGCTTTGATTTTGGCACTAAAAGTATTGGTGTGGCCATAGGCCAAGAAATCACCGCTAG
CGCCACGCCATTGTTGTCAATCAAAGCCGTCGATGGAATACCCAACTGGGATCAAATAGGCGACTTAATCAAAGAGTGGC
AACCCGACTTAGTGGTCGTCGGCCTGCCCTTAAACATGGATGGCACTGAGCAAGATATGACCCACAGGGCGCGTAAATTT
GCGAACCGTATCAATGCTAAGTTCAAAGTCAAAATAGCCACTCAAGATGAACGATTAACCACTACCGATGCTAAGGCGAG
ATTATTCGAGTTAGGCGGATTCAAGGCGCTCACCAAAGGCCAAGTCGATGCTGTGTCTGCCGTACTGATTATTGAAAGCT
ACTTCGAAAATAACTTCAGCAAGTAA

Upstream 100 bases:

>100_bases
GTTGGCCACAGGCCAGCCGAGCTCTTGGCTTTGATGCTTGGCAGGTTTCAGCTCAAGCGGGTCACGCTTAAGCCTATTTC
TTAATATAAGTCAGCACACT

Downstream 100 bases:

>100_bases
TGCCACAATAAATAAAACCACAGAAAAAAGAAAAGGATAAGTTGCCTTATCCTTTTCTGTTTGATGTTTAACCCGATAAA
TTACCGGATCAAAAATGTGG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNSKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKF
ANRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQVDAVSAVLIIESYFENNFSK

Sequences:

>Translated_141_residues
MNSKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKF
ANRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQVDAVSAVLIIESYFENNFSK
>Mature_141_residues
MNSKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGLPLNMDGTEQDMTHRARKF
ANRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQVDAVSAVLIIESYFENNFSK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=137, Percent_Identity=62.7737226277372, Blast_Score=189, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15459; Mature: 15459

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVV
CCCCEEEEECCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTEQDMTHRARKFANRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKG
EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCHHHHHHHCCCCEEECCC
QVDAVSAVLIIESYFENNFSK
CHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNSKTVLGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVV
CCCCEEEEECCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEE
GLPLNMDGTEQDMTHRARKFANRINAKFKVKIATQDERLTTTDAKARLFELGGFKALTKG
EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCHHHHHHHCCCCEEECCC
QVDAVSAVLIIESYFENNFSK
CHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]