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The map label for this gene is yggS [C]

Identifier: 126175227

GI number: 126175227

Start: 3549769

End: 3550467

Strand: Direct

Name: yggS [C]

Synonym: Sbal_3025

Alternate gene names: 126175227

Gene position: 3549769-3550467 (Clockwise)

Preceding gene: 126175222

Following gene: 126175228

Centisome position: 69.23

GC content: 48.07

Gene sequence:

>699_bases
ATGACAACAATAGCAGACAGACTCGCAATCGCCCAGCGCAGGATCGCACAAGCGGCGCAAAAATGTGCACGCCAACCTAG
CAGTATTCGCTTACTTGCCGTCAGCAAGACCAAACCTATTGAAGACATTATAGCAGCCTATCAAGCGGGTCAGCGTTGCT
TTGGCGAAAACTATGTCCAAGAAGGCGCTGAGAAAATTACCGCACTCAAGGAGGATTTTCCGGACATTGAATGGCACTTT
ATCGGGCCACTCCAATCCAACAAAACCAACATAGTCGCCCAGCATTTCGATTGGATGCACACTGTCTCGCGCGACAAAAT
TGCCCAACGTCTCAATGACCAACGTCCAGCTGAATTAGCGCCATTGAACGTCTGCATTCAAATTAATATCAGTGCTGAAG
ACACAAAATCTGGCATAGATGCGGCGCAAATGCTGCCACTGGCCGAGCTGATCGCTCAGCTACCTAATCTCGCACTGAGA
GGCCTAATGGCGATCCCAACGGCTACCGCAGATACTGAGTTACAGCTTAAAGAGTTTTCTATGTTAAACAATCTATTTCA
AGAACTTAAATCGCATTACCCTAGCGTAGACACGCTTTCCATGGGGATGAGTAATGACCTAGATGCAGCGATTAGCTGCG
GTTCAACTATGGTGCGTATTGGCAGTGCCATTTTTGGTGAGCGCAATTACGCTGCGTAA

Upstream 100 bases:

>100_bases
GCAGAAAGGTGTAGATCCGAGGCTTTGTGTTTTACACTAAATGCCAATAACTCAGTGATTTCCATCGTTTGGGATATCCT
TGCAACTAGATAATTACATC

Downstream 100 bases:

>100_bases
ACTCACTCGAGGCATGAAGTTCGAGGTCAGTGTACGAGCTTGACCTTGTTTTTAGCGCTTTATGCCCAAATACTGTATTT
AAGTTCACGACATTTAAGAT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTTIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEGAEKITALKEDFPDIEWHF
IGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPLNVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALR
GLMAIPTATADTELQLKEFSMLNNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA

Sequences:

>Translated_232_residues
MTTIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEGAEKITALKEDFPDIEWHF
IGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPLNVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALR
GLMAIPTATADTELQLKEFSMLNNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA
>Mature_231_residues
TTIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEGAEKITALKEDFPDIEWHFI
GPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPLNVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRG
LMAIPTATADTELQLKEFSMLNNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=237, Percent_Identity=41.3502109704641, Blast_Score=144, Evalue=8e-35,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=57.3275862068966, Blast_Score=266, Evalue=7e-73,
Organism=Caenorhabditis elegans, GI17533025, Length=226, Percent_Identity=39.3805309734513, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=38.2075471698113, Blast_Score=115, Evalue=4e-27,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=44.5497630331754, Blast_Score=146, Evalue=9e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25545; Mature: 25413

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGAEKITALKEDFPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELA
HHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLNVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFS
CEEEEEEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
MLNNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA
HHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGAEKITALKEDFPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELA
HHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLNVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFS
CEEEEEEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
MLNNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA
HHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]