| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is gfcE [H]
Identifier: 126175095
GI number: 126175095
Start: 3404476
End: 3407214
Strand: Reverse
Name: gfcE [H]
Synonym: Sbal_2893
Alternate gene names: 126175095
Gene position: 3407214-3404476 (Counterclockwise)
Preceding gene: 126175096
Following gene: 126175094
Centisome position: 66.45
GC content: 41.77
Gene sequence:
>2739_bases GTGTTACAACAAATCAAACAATTCATCATAGTAGGCCTTAGTGCCACGATATTGATGGGCGCTCAGGCTGATGCCGTTAC GCCATCTCCACAAATGATTGAGCAGTTTAAGCAATTACCAAAATCTGAACAGGCAAGGCTTGCTAAGCAATATGGCATAG ATCCCAACATGCTTTCTGGCTCTGAGTCTCAAGCTCCAGTTACAAATCCCGAAGTTGTAGGGACAAGAGACATTAATACT CCTTTTTCTGATACAGATAGAAAAGCTGCTAGAGCTGAGTTGGATTTTTCTGAAGATACCAGCAAAATAAAATTGCGTCG TTTCGGTTATGAGATGTTTGCGGGTGAGCCTAGCACTTTTGCACCTGTATCTGATGTGCCTGTTCCTGGCGAATACCTTG TTGGTCCAGGGGATAACATCAAAGTTCAGCTGTATGGTAAAGATAACAAGGAATATGATCTTGTTATTAACCGAGAAGGT GTTATTCAGTTCCCTGAGTTAGGTCCTATCCCTGTAATGGGACTCAGTTTTTCTGAGCTTCGAGACTCTTTATCGCAAAG AATCAAACAACAAATGATAGGTATTGAATCTAATATTACTATGGGTGAGCTGCGTTCTATCCGCATTTTTGTTGCCGGTG ATGCCTATAAGCCTGGCTCTTATACTGTTTCAAGTTTATCAACAATGACTCAGGCATTGTTTGTTGCTGGCGGTGTCAAT GAGATTGGTTCATTACGTAATGTGCAGCTTAAACGTAATGGTAAACTGATGGGTACTTTAGATCTCTATGACCTTCTGAT GCGTGGTGATGCATCTGGGGATTTACGACTTCACTCCGGTGATGTCGTCTTTATTCCTTCGATCGGTGGTCTTGTTACTG TCACTGGAGAAGTTAGACGTCCTGCCATTTACGAATTGAAAAACAATGAAAGTATGGCTGATGTGATGGCCATGGCAGCG GGGTTAAATGCCGGTGCATACCCTAAAAGTAGTTCGATAGAGCGTTACAACAATAAATCATTAAAAACCATAGTTAATGT AGACCTAACCTCTGAGCAAGGTCGGAATACTCTTGCGAAAGCCGGCGATATTATTAGAGTAAAAAGTGCATCTGAGCAAT ATGAGAGTGCCATTACGGTAGCTGGTGCGGTAGTTCGTCCTGGAAAATATCAGTGGTTTGCTGGTCAAAAAATAAGTGAC ATATTACCTTCTTTATGGGGAGATTTAGCGGCTTCAGCCGATCTCGATTACGCAATTGTAATTCGTGAAGTCAATCAATA TGGTGATATTGAAGTACATCAATTCTCTCCAGGGAAAGCTATTGGTGTAAAAGGAAGCGATCAAGATCTTAGCCTAAATG CACGAGATAAAATTATTGTCTTTAATTTTTCTGATGATATACAGAATAGATATGAGCTGAATAAATTAGTAAAAGAGCGT GTAGAGAAAGTTACGTCATTAAATACGAGTAATCTTCTAGGTTCTGACTTGTTCAAAGCTGGATTTGTTCAACTCGATAA AACCAAGTTATCTCAACGTTCTGATCTCGCAGGTGTCGTGTTAACTGATAAGAAAAATGCTGAAGAAGCCGAAATTGTTA AAGGCGTCGTCAATAAAATGTTGGCGAATCTTTTTGATGATAATGACCTGCTTAAACTCAGTAATCAAATGGGGCGCCAA GAGTTACTGTATCCAGTCATGGTTAAATTAAATAGTCAAGGGCGAGCAGGCTCCGGTATTCAAATTGTTGCTATTGATGG ACAGGTAAGAGAGCCCGGAGTATATCCGCTCACCGTAGATGCTCGTGTTAACGATTTAGTCATTGCTGCAGGTGGTTTAA AAGAAGGTGCTTATACAGCTAGAGCTGAATTAACCACTACCTCAACCGATATCAATGGCTCGAGTATCAAGCATCACAAC TTGGATCTAACGCAAGCTTTACAAGGGATGGATAATGCCAATATTCGTCTAACTGGACGTGACATGTTAACAGTAATGAC GACTCCTGACTGGCAAGAAACCAAGGTTGTTGAAATCCGAGGCGAAGTGAAATTCCCAGGGCGTTATAATATTCGCCGCG GTGAAACATTAAACGATTTAATTACTCGCGTTGGCGGCTTTACCGAATACGCCTACTTGCCATCAGCCGTGTTTGTACGT GAGTCTGTTCGTAAGCAAGAGCAAATTGAAATCAAAAAGTTAGCTGACCAATTGCGTCGTGATATCGCAACACGTGGTGT ATCTAAAGACGGTGCGGTTGTCAATTATGCCGATGCACAATTGATGTTGGCTGATTTAGAAAATATAAAGGCGGTAGGAC GTTTAGTTGTCGACTTAGCGGCAATTTCTCTAGGGATTGAACAAGCGAATATTCAGCTCGAAGATGCAGATATTCTCTAT GTTCCCTCCACCAAGCAAACTATTGCTGTGATGGGCGAAGTTCAGCATCCTGCAACTCATCGCTTTAAAGATGGCTTAAC TCTAGACCAATACTTAGCTATGTCAGGTGGAGCACGTAAACGCGCAGATGAAGACCGTACTTACGTTATCCAAGCAAATG GCTCAGTGCTCATGCCTGGCCGTTCGAGTTGGTTTAGTAGCGAAGATCAATTACAACCGGGTGATACCATTATTGTGCCA TTAGATACGGAATATAAAGATAACCTAAGTCTCTGGACACTGATCACGGGTATTATCTATAACACCGCAGTTGCAGTATC TGTTATAGCAGGGTTGTAG
Upstream 100 bases:
>100_bases CAGCGAACGTTGCGTTCTGTAAGTGAAATATTGTGTAAACGATCTACTTAGTTTTTAGTCGCACAGCGACGCCTTGTTTT CAACCAATCGGAGATATCTG
Downstream 100 bases:
>100_bases AAGGAAGAAACTAGAACGTTCGCAAGCTCGCTCTAGGCTCTATAATTGCTCCTAAGCGCAGCTGTCGCCTTTCATGTGAT GTTTATAAAGAACTTAAAAA
Product: polysaccharide export protein
Products: NA
Alternate protein names: Group 4 capsule protein E homolog [H]
Number of amino acids: Translated: 912; Mature: 912
Protein sequence:
>912_residues MLQQIKQFIIVGLSATILMGAQADAVTPSPQMIEQFKQLPKSEQARLAKQYGIDPNMLSGSESQAPVTNPEVVGTRDINT PFSDTDRKAARAELDFSEDTSKIKLRRFGYEMFAGEPSTFAPVSDVPVPGEYLVGPGDNIKVQLYGKDNKEYDLVINREG VIQFPELGPIPVMGLSFSELRDSLSQRIKQQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTMTQALFVAGGVN EIGSLRNVQLKRNGKLMGTLDLYDLLMRGDASGDLRLHSGDVVFIPSIGGLVTVTGEVRRPAIYELKNNESMADVMAMAA GLNAGAYPKSSSIERYNNKSLKTIVNVDLTSEQGRNTLAKAGDIIRVKSASEQYESAITVAGAVVRPGKYQWFAGQKISD ILPSLWGDLAASADLDYAIVIREVNQYGDIEVHQFSPGKAIGVKGSDQDLSLNARDKIIVFNFSDDIQNRYELNKLVKER VEKVTSLNTSNLLGSDLFKAGFVQLDKTKLSQRSDLAGVVLTDKKNAEEAEIVKGVVNKMLANLFDDNDLLKLSNQMGRQ ELLYPVMVKLNSQGRAGSGIQIVAIDGQVREPGVYPLTVDARVNDLVIAAGGLKEGAYTARAELTTTSTDINGSSIKHHN LDLTQALQGMDNANIRLTGRDMLTVMTTPDWQETKVVEIRGEVKFPGRYNIRRGETLNDLITRVGGFTEYAYLPSAVFVR ESVRKQEQIEIKKLADQLRRDIATRGVSKDGAVVNYADAQLMLADLENIKAVGRLVVDLAAISLGIEQANIQLEDADILY VPSTKQTIAVMGEVQHPATHRFKDGLTLDQYLAMSGGARKRADEDRTYVIQANGSVLMPGRSSWFSSEDQLQPGDTIIVP LDTEYKDNLSLWTLITGIIYNTAVAVSVIAGL
Sequences:
>Translated_912_residues MLQQIKQFIIVGLSATILMGAQADAVTPSPQMIEQFKQLPKSEQARLAKQYGIDPNMLSGSESQAPVTNPEVVGTRDINT PFSDTDRKAARAELDFSEDTSKIKLRRFGYEMFAGEPSTFAPVSDVPVPGEYLVGPGDNIKVQLYGKDNKEYDLVINREG VIQFPELGPIPVMGLSFSELRDSLSQRIKQQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTMTQALFVAGGVN EIGSLRNVQLKRNGKLMGTLDLYDLLMRGDASGDLRLHSGDVVFIPSIGGLVTVTGEVRRPAIYELKNNESMADVMAMAA GLNAGAYPKSSSIERYNNKSLKTIVNVDLTSEQGRNTLAKAGDIIRVKSASEQYESAITVAGAVVRPGKYQWFAGQKISD ILPSLWGDLAASADLDYAIVIREVNQYGDIEVHQFSPGKAIGVKGSDQDLSLNARDKIIVFNFSDDIQNRYELNKLVKER VEKVTSLNTSNLLGSDLFKAGFVQLDKTKLSQRSDLAGVVLTDKKNAEEAEIVKGVVNKMLANLFDDNDLLKLSNQMGRQ ELLYPVMVKLNSQGRAGSGIQIVAIDGQVREPGVYPLTVDARVNDLVIAAGGLKEGAYTARAELTTTSTDINGSSIKHHN LDLTQALQGMDNANIRLTGRDMLTVMTTPDWQETKVVEIRGEVKFPGRYNIRRGETLNDLITRVGGFTEYAYLPSAVFVR ESVRKQEQIEIKKLADQLRRDIATRGVSKDGAVVNYADAQLMLADLENIKAVGRLVVDLAAISLGIEQANIQLEDADILY VPSTKQTIAVMGEVQHPATHRFKDGLTLDQYLAMSGGARKRADEDRTYVIQANGSVLMPGRSSWFSSEDQLQPGDTIIVP LDTEYKDNLSLWTLITGIIYNTAVAVSVIAGL >Mature_912_residues MLQQIKQFIIVGLSATILMGAQADAVTPSPQMIEQFKQLPKSEQARLAKQYGIDPNMLSGSESQAPVTNPEVVGTRDINT PFSDTDRKAARAELDFSEDTSKIKLRRFGYEMFAGEPSTFAPVSDVPVPGEYLVGPGDNIKVQLYGKDNKEYDLVINREG VIQFPELGPIPVMGLSFSELRDSLSQRIKQQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTMTQALFVAGGVN EIGSLRNVQLKRNGKLMGTLDLYDLLMRGDASGDLRLHSGDVVFIPSIGGLVTVTGEVRRPAIYELKNNESMADVMAMAA GLNAGAYPKSSSIERYNNKSLKTIVNVDLTSEQGRNTLAKAGDIIRVKSASEQYESAITVAGAVVRPGKYQWFAGQKISD ILPSLWGDLAASADLDYAIVIREVNQYGDIEVHQFSPGKAIGVKGSDQDLSLNARDKIIVFNFSDDIQNRYELNKLVKER VEKVTSLNTSNLLGSDLFKAGFVQLDKTKLSQRSDLAGVVLTDKKNAEEAEIVKGVVNKMLANLFDDNDLLKLSNQMGRQ ELLYPVMVKLNSQGRAGSGIQIVAIDGQVREPGVYPLTVDARVNDLVIAAGGLKEGAYTARAELTTTSTDINGSSIKHHN LDLTQALQGMDNANIRLTGRDMLTVMTTPDWQETKVVEIRGEVKFPGRYNIRRGETLNDLITRVGGFTEYAYLPSAVFVR ESVRKQEQIEIKKLADQLRRDIATRGVSKDGAVVNYADAQLMLADLENIKAVGRLVVDLAAISLGIEQANIQLEDADILY VPSTKQTIAVMGEVQHPATHRFKDGLTLDQYLAMSGGARKRADEDRTYVIQANGSVLMPGRSSWFSSEDQLQPGDTIIVP LDTEYKDNLSLWTLITGIIYNTAVAVSVIAGL
Specific function: May be involved in polysaccharide transport [H]
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BexD/CtrA/VexA family [H]
Homologues:
Organism=Escherichia coli, GI1787218, Length=207, Percent_Identity=27.536231884058, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788376, Length=189, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 - InterPro: IPR019554 [H]
Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 99713; Mature: 99713
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQQIKQFIIVGLSATILMGAQADAVTPSPQMIEQFKQLPKSEQARLAKQYGIDPNMLSG CHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC SESQAPVTNPEVVGTRDINTPFSDTDRKAARAELDFSEDTSKIKLRRFGYEMFAGEPSTF CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHEECCCCCCCCCEEHHHHCHHHHCCCCCCC APVSDVPVPGEYLVGPGDNIKVQLYGKDNKEYDLVINREGVIQFPELGPIPVMGLSFSEL CCCCCCCCCCCEEECCCCCEEEEEEECCCCCEEEEECCCCCEECCCCCCCCEECCCHHHH RDSLSQRIKQQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTMTQALFVAGGVN HHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCHH EIGSLRNVQLKRNGKLMGTLDLYDLLMRGDASGDLRLHSGDVVFIPSIGGLVTVTGEVRR HHCCCEEEEEECCCCEEEEHHHHHHHHCCCCCCCEEEECCCEEEEECCCCEEEEECCCCC PAIYELKNNESMADVMAMAAGLNAGAYPKSSSIERYNNKSLKTIVNVDLTSEQGRNTLAK CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCHHHHH AGDIIRVKSASEQYESAITVAGAVVRPGKYQWFAGQKISDILPSLWGDLAASADLDYAIV CCCEEEEECCHHHHHHHHEEHHEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE IREVNQYGDIEVHQFSPGKAIGVKGSDQDLSLNARDKIIVFNFSDDIQNRYELNKLVKER EEEHHCCCCEEEEEECCCCEEECCCCCCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHH VEKVTSLNTSNLLGSDLFKAGFVQLDKTKLSQRSDLAGVVLTDKKNAEEAEIVKGVVNKM HHHHHCCCCHHHHHHHHHHHCCEEECHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH LANLFDDNDLLKLSNQMGRQELLYPVMVKLNSQGRAGSGIQIVAIDGQVREPGVYPLTVD HHHHCCCCCHHHHHHHCCHHHHCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEC ARVNDLVIAAGGLKEGAYTARAELTTTSTDINGSSIKHHNLDLTQALQGMDNANIRLTGR CCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCEEECCCCHHHHHCCCCCCCEEEECC DMLTVMTTPDWQETKVVEIRGEVKFPGRYNIRRGETLNDLITRVGGFTEYAYLPSAVFVR EEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHCCHHHHHH ESVRKQEQIEIKKLADQLRRDIATRGVSKDGAVVNYADAQLMLADLENIKAVGRLVVDLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHH AISLGIEQANIQLEDADILYVPSTKQTIAVMGEVQHPATHRFKDGLTLDQYLAMSGGARK HHHHCEEECEEEEECCEEEEECCCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHCCCCCC RADEDRTYVIQANGSVLMPGRSSWFSSEDQLQPGDTIIVPLDTEYKDNLSLWTLITGIIY CCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH NTAVAVSVIAGL HHHHHHHHHHCC >Mature Secondary Structure MLQQIKQFIIVGLSATILMGAQADAVTPSPQMIEQFKQLPKSEQARLAKQYGIDPNMLSG CHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCC SESQAPVTNPEVVGTRDINTPFSDTDRKAARAELDFSEDTSKIKLRRFGYEMFAGEPSTF CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHEECCCCCCCCCEEHHHHCHHHHCCCCCCC APVSDVPVPGEYLVGPGDNIKVQLYGKDNKEYDLVINREGVIQFPELGPIPVMGLSFSEL CCCCCCCCCCCEEECCCCCEEEEEEECCCCCEEEEECCCCCEECCCCCCCCEECCCHHHH RDSLSQRIKQQMIGIESNITMGELRSIRIFVAGDAYKPGSYTVSSLSTMTQALFVAGGVN HHHHHHHHHHHHCCCCCCCCHHCCEEEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCHH EIGSLRNVQLKRNGKLMGTLDLYDLLMRGDASGDLRLHSGDVVFIPSIGGLVTVTGEVRR HHCCCEEEEEECCCCEEEEHHHHHHHHCCCCCCCEEEECCCEEEEECCCCEEEEECCCCC PAIYELKNNESMADVMAMAAGLNAGAYPKSSSIERYNNKSLKTIVNVDLTSEQGRNTLAK CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCHHHHH AGDIIRVKSASEQYESAITVAGAVVRPGKYQWFAGQKISDILPSLWGDLAASADLDYAIV CCCEEEEECCHHHHHHHHEEHHEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEE IREVNQYGDIEVHQFSPGKAIGVKGSDQDLSLNARDKIIVFNFSDDIQNRYELNKLVKER EEEHHCCCCEEEEEECCCCEEECCCCCCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHH VEKVTSLNTSNLLGSDLFKAGFVQLDKTKLSQRSDLAGVVLTDKKNAEEAEIVKGVVNKM HHHHHCCCCHHHHHHHHHHHCCEEECHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH LANLFDDNDLLKLSNQMGRQELLYPVMVKLNSQGRAGSGIQIVAIDGQVREPGVYPLTVD HHHHCCCCCHHHHHHHCCHHHHCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEC ARVNDLVIAAGGLKEGAYTARAELTTTSTDINGSSIKHHNLDLTQALQGMDNANIRLTGR CCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCEEECCCCHHHHHCCCCCCCEEEECC DMLTVMTTPDWQETKVVEIRGEVKFPGRYNIRRGETLNDLITRVGGFTEYAYLPSAVFVR EEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHCCHHHHHH ESVRKQEQIEIKKLADQLRRDIATRGVSKDGAVVNYADAQLMLADLENIKAVGRLVVDLA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHH AISLGIEQANIQLEDADILYVPSTKQTIAVMGEVQHPATHRFKDGLTLDQYLAMSGGARK HHHHCEEECEEEEECCEEEEECCCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHCCCCCC RADEDRTYVIQANGSVLMPGRSSWFSSEDQLQPGDTIIVPLDTEYKDNLSLWTLITGIIY CCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH NTAVAVSVIAGL HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]