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The map label for this gene is rfaH [H]

Identifier: 126175096

GI number: 126175096

Start: 3408002

End: 3408508

Strand: Reverse

Name: rfaH [H]

Synonym: Sbal_2894

Alternate gene names: 126175096

Gene position: 3408508-3408002 (Counterclockwise)

Preceding gene: 126175098

Following gene: 126175095

Centisome position: 66.48

GC content: 40.24

Gene sequence:

>507_bases
ATGAAGGCATGGTACCTTTTGTATTGTAAGCCTCGTAGTGAAGCGAGAGCACAACAGAACTTAGCACTTCAAAATTTAGA
GACGTATTTGCCTATGGTCTCTGAAGAGAAATCTCATCGCGGACGGAAACAGGTCTGTCGTGTTCCATTATTCCCGAACT
ATTTATTTATCAATTTCGACCCAAGCCAGACAAGCGTTAGGCAGGTCCACTCTACTCGTGGTGTGAATCGAATCGTTAAT
TGTCAAGAAAAAATGACGCCCATTGACGACAGAGTTATCCATGCCATTCGCATGAAAGAATTAACGCCTGCCCAAACAGT
ATTAGCCGAAGCATTAGAGCTAAAAACTGGGGAGAAAATTCGTTTTACAGATGGACCATTTGTTGATCTAGAAGGTATTT
TTCAAGAAAAATGCCCAAATAAGCGTTGTCATATATTATTTAACATAATGGGTCAAGTGAAAACTGTTGCTGTACCTGAG
AAAAGCATCAAACGAGTCTGCATTTAA

Upstream 100 bases:

>100_bases
CTGGAATGGGCGAAAAACTACTTCCATCGACTTAAGCATCTTTGCTATGATTGCGGCCCGTGAACGGACGTCACTTATAA
TAGGGCAGTGAGATTAGCGT

Downstream 100 bases:

>100_bases
TTGTTCAATACAAGTATATTTGTAAGAATAGCTCTAATGATTTTGTAAGATATTAGCCATGCTAAAAGCCAGTGAAATTT
TCACTTTAGCGATATTGCTT

Product: transcriptional acivator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSHRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVN
CQEKMTPIDDRVIHAIRMKELTPAQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHILFNIMGQVKTVAVPE
KSIKRVCI

Sequences:

>Translated_168_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSHRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVN
CQEKMTPIDDRVIHAIRMKELTPAQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHILFNIMGQVKTVAVPE
KSIKRVCI
>Mature_168_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSHRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVN
CQEKMTPIDDRVIHAIRMKELTPAQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHILFNIMGQVKTVAVPE
KSIKRVCI

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=152, Percent_Identity=33.5526315789474, Blast_Score=93, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19416; Mature: 19416

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSHRGRKQVCRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHCCCCCCCCEEEEEEC
PSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEALELKTGEKI
CCHHHHHHHHHHCCHHHHHCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
RFTDGPFVDLEGIFQEKCPNKRCHILFNIMGQVKTVAVPEKSIKRVCI
EECCCCEECHHHHHHHCCCCCCCEEHEEECCCCEEEECCHHHHHHCCC
>Mature Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSHRGRKQVCRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHCCCCCCCCEEEEEEC
PSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRVIHAIRMKELTPAQTVLAEALELKTGEKI
CCHHHHHHHHHHCCHHHHHCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
RFTDGPFVDLEGIFQEKCPNKRCHILFNIMGQVKTVAVPEKSIKRVCI
EECCCCEECHHHHHHHCCCCCCCEEHEEECCCCEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]