Click here to switch to the map view.

The map label for this gene is amsD [H]

Identifier: 126175085

GI number: 126175085

Start: 3393704

End: 3394750

Strand: Reverse

Name: amsD [H]

Synonym: Sbal_2882

Alternate gene names: 126175085

Gene position: 3394750-3393704 (Counterclockwise)

Preceding gene: 126175086

Following gene: 126175084

Centisome position: 66.21

GC content: 29.51

Gene sequence:

>1047_bases
ATGGAAAATGTTAAATTGCATTTGTTGCTTCTGAATGCATATGATTTTGGTGGGATAGAGAGAGCTTCCTGCACCCTTTT
GCGATCTTTTTTAGATGTTAATATTAAATGTGATTTATTTTCGGTTAGAGGCGAAGAAGATAAATCATCGCATTATATTT
ATCCCCAAAAACCAATAGATTTAAAAGCTGGACATAATGATTTTGTAAAGTTATACCATTATGTAAAATCATTGTCTGAC
GACATAGTTGTTATTTCAACCTATGATAGAATAACGATAATGCTTTCTTTTTTATTTATTTTTTTAAGAAAAAAATGTAA
ATTGATTGCACATCAACATGCTGATTATTATGCTCACTCCAAGAAAGTAAGACTACTTAGATATTTTTTTTACAGACGAG
TCAACACTATTTGCAGTTTGACAAAACAAGATATGCAATTTTATTTGAAATGGCATCCAGACGTTAAGTTAATCCCTAAT
ATTTTATCTATACCTGCCAATGATAACGCGAAAAATATTGATTTACGTGATCGATCTATAGATTTAATTGCTATCGGAAG
GCTAGATTCGATAAAAAGATTTCAAGATTTTATTGTTACAGCTAATACATTAATTAAATCTGAAGTTATTAATAAAGCTT
TGCTAGTTGGAGATGGACCTGAATACTCTTTGCTTAATGATCTTGATGAACACCAAATTATGATTGGTCGTAATGATGAT
GTATTTTCATTACTTAGCAATTCTAAAATATTGTTAGTTACATCTTCTAGGGAGAGTTTTTCTATGGTTATTTTGGAGGC
TATGTCACAGGGCTGTTTGGTTATCAGTTATGATTGTCCTACAGGACCCTCTGAGTTAATTCAAAATAATGTCAATGGCT
ATTTGATTGATAATTCAAATAGAGCATTACTTGAAGAGAAGTGTAGCTATGTGATTAAACACTTAGATGATAATAATATG
ATCTCTAAAAATGCTATTTTAACGTCACTAGACTATTCATCAAGTAAAATTGTAAATAAATGGATAGATATTATAAATGA
AAATTAG

Upstream 100 bases:

>100_bases
GGGTGAGCTATATATAATCCGTCGCTTGTCGCATTTAATTTTATGATATAAGTTTACGATGTGATTCATAGCCATAATAT
TGTTATAGGTTGATGTTAAA

Downstream 100 bases:

>100_bases
TGTCATTATACCTGCATTTAATGCGGAAAAAACCATAGAAGAATCTATAAATTCTGTTTTTTTACAAGATATGAATGAAT
TAATCGAGATTATAGTTATC

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MENVKLHLLLLNAYDFGGIERASCTLLRSFLDVNIKCDLFSVRGEEDKSSHYIYPQKPIDLKAGHNDFVKLYHYVKSLSD
DIVVISTYDRITIMLSFLFIFLRKKCKLIAHQHADYYAHSKKVRLLRYFFYRRVNTICSLTKQDMQFYLKWHPDVKLIPN
ILSIPANDNAKNIDLRDRSIDLIAIGRLDSIKRFQDFIVTANTLIKSEVINKALLVGDGPEYSLLNDLDEHQIMIGRNDD
VFSLLSNSKILLVTSSRESFSMVILEAMSQGCLVISYDCPTGPSELIQNNVNGYLIDNSNRALLEEKCSYVIKHLDDNNM
ISKNAILTSLDYSSSKIVNKWIDIINEN

Sequences:

>Translated_348_residues
MENVKLHLLLLNAYDFGGIERASCTLLRSFLDVNIKCDLFSVRGEEDKSSHYIYPQKPIDLKAGHNDFVKLYHYVKSLSD
DIVVISTYDRITIMLSFLFIFLRKKCKLIAHQHADYYAHSKKVRLLRYFFYRRVNTICSLTKQDMQFYLKWHPDVKLIPN
ILSIPANDNAKNIDLRDRSIDLIAIGRLDSIKRFQDFIVTANTLIKSEVINKALLVGDGPEYSLLNDLDEHQIMIGRNDD
VFSLLSNSKILLVTSSRESFSMVILEAMSQGCLVISYDCPTGPSELIQNNVNGYLIDNSNRALLEEKCSYVIKHLDDNNM
ISKNAILTSLDYSSSKIVNKWIDIINEN
>Mature_348_residues
MENVKLHLLLLNAYDFGGIERASCTLLRSFLDVNIKCDLFSVRGEEDKSSHYIYPQKPIDLKAGHNDFVKLYHYVKSLSD
DIVVISTYDRITIMLSFLFIFLRKKCKLIAHQHADYYAHSKKVRLLRYFFYRRVNTICSLTKQDMQFYLKWHPDVKLIPN
ILSIPANDNAKNIDLRDRSIDLIAIGRLDSIKRFQDFIVTANTLIKSEVINKALLVGDGPEYSLLNDLDEHQIMIGRNDD
VFSLLSNSKILLVTSSRESFSMVILEAMSQGCLVISYDCPTGPSELIQNNVNGYLIDNSNRALLEEKCSYVIKHLDDNNM
ISKNAILTSLDYSSSKIVNKWIDIINEN

Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. May be involved in the formation of galactose alpha-1,6 linkages in amylovoran [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 39991; Mature: 39991

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENVKLHLLLLNAYDFGGIERASCTLLRSFLDVNIKCDLFSVRGEEDKSSHYIYPQKPID
CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEECCCCCCE
LKAGHNDFVKLYHYVKSLSDDIVVISTYDRITIMLSFLFIFLRKKCKLIAHQHADYYAHS
EECCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KKVRLLRYFFYRRVNTICSLTKQDMQFYLKWHPDVKLIPNILSIPANDNAKNIDLRDRSI
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEECCHHEECCCCCCCCEEEECCCCE
DLIAIGRLDSIKRFQDFIVTANTLIKSEVINKALLVGDGPEYSLLNDLDEHQIMIGRNDD
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCCEEEEECCCC
VFSLLSNSKILLVTSSRESFSMVILEAMSQGCLVISYDCPTGPSELIQNNVNGYLIDNSN
HHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEEECCC
RALLEEKCSYVIKHLDDNNMISKNAILTSLDYSSSKIVNKWIDIINEN
CHHHHHHHHHHHHHCCCCCEEECCEEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENVKLHLLLLNAYDFGGIERASCTLLRSFLDVNIKCDLFSVRGEEDKSSHYIYPQKPID
CCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEECCCCCCE
LKAGHNDFVKLYHYVKSLSDDIVVISTYDRITIMLSFLFIFLRKKCKLIAHQHADYYAHS
EECCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KKVRLLRYFFYRRVNTICSLTKQDMQFYLKWHPDVKLIPNILSIPANDNAKNIDLRDRSI
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEECCHHEECCCCCCCCEEEECCCCE
DLIAIGRLDSIKRFQDFIVTANTLIKSEVINKALLVGDGPEYSLLNDLDEHQIMIGRNDD
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHCCCCCCEEEEECCCC
VFSLLSNSKILLVTSSRESFSMVILEAMSQGCLVISYDCPTGPSELIQNNVNGYLIDNSN
HHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEEECCC
RALLEEKCSYVIKHLDDNNMISKNAILTSLDYSSSKIVNKWIDIINEN
CHHHHHHHHHHHHHCCCCCEEECCEEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596293 [H]