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The map label for this gene is yibD [C]

Identifier: 126175084

GI number: 126175084

Start: 3392899

End: 3393714

Strand: Reverse

Name: yibD [C]

Synonym: Sbal_2881

Alternate gene names: 126175084

Gene position: 3393714-3392899 (Counterclockwise)

Preceding gene: 126175085

Following gene: 126175083

Centisome position: 66.19

GC content: 29.53

Gene sequence:

>816_bases
ATGAAAATTAGTGTCATTATACCTGCATTTAATGCGGAAAAAACCATAGAAGAATCTATAAATTCTGTTTTTTTACAAGA
TATGAATGAATTAATCGAGATTATAGTTATCAATGATGGTTCTACAGACCTTACTGTAAATGTTGTCAACAAAATTATAG
AACAGAACCCTCTTTCTAAAATAATTATTTTAAATCAAAATAATCAAGGTGTTGCTACTGCTAGAAATAATGGTGTAAAT
AAAGCTATTGGTGAATATATTGCTTTTTTAGATTCTGATGACGTTTGGGAAAAATATAAACTTAAGCGACAAGCTGACTT
TCTTGATATGCATTTAAACTTTGCTTTGGTAGCCGGAAATTTTAACGGTCTAGGTGCGGATTTTACTCTGTTAAAAAAAA
TAGAGAGTGATAATTCTTATTATGAGGTTACTTTTGATAATTTGCTACTTAAACATTACTTTCAGCCCTCAACTGTACTA
TTGCGTAAAGATATATTTGTGAAAGTTGGTGGTTTCAAATCTGGAATGACGCATGCAGAAGAGGGATTGTTATTTTTCAA
ATTAGCATATTCTCATAAATGTGCACTAGATAAAAATATAACAATTAATTATGGTAATGGAAAGCATGCTTTTGGTGACT
CAGGTCTGGCATCAAATTTGAGAAAAATGCAATTTGGCGAGCTTTATAATCTATGTTGTATTTATAGAGAAAATAAGATA
AGCGTGTTACGGTTTATTTTTTTGTTTTTTTATTCTTGTGCTAAGTTTGTAAGAAGAGTTTTTATTAAAGAAATAATTTT
GCCATTCAGGCGGTAA

Upstream 100 bases:

>100_bases
AAACACTTAGATGATAATAATATGATCTCTAAAAATGCTATTTTAACGTCACTAGACTATTCATCAAGTAAAATTGTAAA
TAAATGGATAGATATTATAA

Downstream 100 bases:

>100_bases
CTTACTTAGGGCTATTAGGGGGATGTATGAGAGTTAGAGGTTATAATTTATCCGGCATTCTATATTTAGTTTTCTGTTTT
TGTTATACGAAGTGTTTTTA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKISVIIPAFNAEKTIEESINSVFLQDMNELIEIIVINDGSTDLTVNVVNKIIEQNPLSKIIILNQNNQGVATARNNGVN
KAIGEYIAFLDSDDVWEKYKLKRQADFLDMHLNFALVAGNFNGLGADFTLLKKIESDNSYYEVTFDNLLLKHYFQPSTVL
LRKDIFVKVGGFKSGMTHAEEGLLFFKLAYSHKCALDKNITINYGNGKHAFGDSGLASNLRKMQFGELYNLCCIYRENKI
SVLRFIFLFFYSCAKFVRRVFIKEIILPFRR

Sequences:

>Translated_271_residues
MKISVIIPAFNAEKTIEESINSVFLQDMNELIEIIVINDGSTDLTVNVVNKIIEQNPLSKIIILNQNNQGVATARNNGVN
KAIGEYIAFLDSDDVWEKYKLKRQADFLDMHLNFALVAGNFNGLGADFTLLKKIESDNSYYEVTFDNLLLKHYFQPSTVL
LRKDIFVKVGGFKSGMTHAEEGLLFFKLAYSHKCALDKNITINYGNGKHAFGDSGLASNLRKMQFGELYNLCCIYRENKI
SVLRFIFLFFYSCAKFVRRVFIKEIILPFRR
>Mature_271_residues
MKISVIIPAFNAEKTIEESINSVFLQDMNELIEIIVINDGSTDLTVNVVNKIIEQNPLSKIIILNQNNQGVATARNNGVN
KAIGEYIAFLDSDDVWEKYKLKRQADFLDMHLNFALVAGNFNGLGADFTLLKKIESDNSYYEVTFDNLLLKHYFQPSTVL
LRKDIFVKVGGFKSGMTHAEEGLLFFKLAYSHKCALDKNITINYGNGKHAFGDSGLASNLRKMQFGELYNLCCIYRENKI
SVLRFIFLFFYSCAKFVRRVFIKEIILPFRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=93, Percent_Identity=43.010752688172, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787259, Length=92, Percent_Identity=43.4782608695652, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI212640903, Length=210, Percent_Identity=28.0952380952381, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 30957; Mature: 30957

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISVIIPAFNAEKTIEESINSVFLQDMNELIEIIVINDGSTDLTVNVVNKIIEQNPLSK
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEHHHHHHHHCCCCCCE
IIILNQNNQGVATARNNGVNKAIGEYIAFLDSDDVWEKYKLKRQADFLDMHLNFALVAGN
EEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEEEEECC
FNGLGADFTLLKKIESDNSYYEVTFDNLLLKHYFQPSTVLLRKDIFVKVGGFKSGMTHAE
CCCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHH
EGLLFFKLAYSHKCALDKNITINYGNGKHAFGDSGLASNLRKMQFGELYNLCCIYRENKI
CCEEEEEEECCCCEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCH
SVLRFIFLFFYSCAKFVRRVFIKEIILPFRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKISVIIPAFNAEKTIEESINSVFLQDMNELIEIIVINDGSTDLTVNVVNKIIEQNPLSK
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEHHHHHHHHCCCCCCE
IIILNQNNQGVATARNNGVNKAIGEYIAFLDSDDVWEKYKLKRQADFLDMHLNFALVAGN
EEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEEEEEEECC
FNGLGADFTLLKKIESDNSYYEVTFDNLLLKHYFQPSTVLLRKDIFVKVGGFKSGMTHAE
CCCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHH
EGLLFFKLAYSHKCALDKNITINYGNGKHAFGDSGLASNLRKMQFGELYNLCCIYRENKI
CCEEEEEEECCCCEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCH
SVLRFIFLFFYSCAKFVRRVFIKEIILPFRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]