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The map label for this gene is virA [H]

Identifier: 126175071

GI number: 126175071

Start: 3376551

End: 3377912

Strand: Reverse

Name: virA [H]

Synonym: Sbal_2867

Alternate gene names: 126175071

Gene position: 3377912-3376551 (Counterclockwise)

Preceding gene: 126175072

Following gene: 126175070

Centisome position: 65.88

GC content: 44.93

Gene sequence:

>1362_bases
ATGACCCGAATGCTTGATCGAATCCTATTTGATGTCAGTAAGTCTCAGGTTATTGATGAGGGCGATCTCATTCAAGCATC
ACAACTTATAGTGAGTTCAATCTGTAAGGGATTACAGATCACGCGGGCGGGTATTTGGTTGTTTGGTCAAGATAATCAGA
CTATTGCTTGTTATTATTTACTCGACCACCAACAGCCGCAAGAAGCGTTAGTGCTCACTCGTGCGCAGTTTCCCCATTAC
TTCAGCTTACTCGACAATGAGCTCACCATTGTCGCTAATAAGGCGCAAACGGATCCTGCCACCAAAGAGTTTGTCGACAG
CTACCTGAAACCGAATCAGATCACCTCTATGCTGGATAGCCCCATTCGTCACCACGGCAAAATGGTGGGTATTATTTGTT
CTGAGCATCAAGGCGAGGCGAGGGAATGGACGCGGGATGAAAAGGCGTTTGCTTCGGCACTGGCCGATCTCTTTGGCCGA
GCCATGAGTGCTAAAGAGATCCTCGAATACCAACAACAGCTCAAACTCATCAATACCGATTTGGAGCATCAAGTTGAACT
GCGAACAACAGAACTTGAGACGGCACTATCGACCTTAAAATCGACCCAAAAGCACTTAATTGAAAATGAAAAAATGGCCG
CCTTAGGTAGCTTAGTCGCCGGTGTGGCCCACGAGGTGAATACGCCGCTGGGTATCGCGGTAACATCCGTGACCCATTGT
TTGGATGAGTTATCGCTACTAAAAGGGTCATTCGAGAAAAACGACCTCGATGAAGATAAGTTTGTCAGTTTTATCAATAC
AATGCAGGACGGTTTATGTTTAATTGAGCGTAATCTTTCCCGCGCAGCAGAACTGGTTCATAACTTTAAACGCACTGCCG
CAGATCAATCGATATTGGAACGTGAGCGCTTTAATTTAAAGAATTATATCTTCCAAATATTTAGTTCGTTAAAGCCCTTA
ATGCGTAAGAAAAACATCACTTTAAAAGTCGAACTTGATGACAATATTTTTATTGATTCCTACCCCGGCGCCATCGCTCA
GATTTTTACCAATTTAGTCGCTAACAGTTTTCGCCATGCTTTTCCCGATGACTTTGCCGGAGAGAAACAAATTGTCATTG
TGGTTGAAAAGGAGGGATCGCAGATCAAGATGACTTATCAAGACAATGGCATAGGCATGTCCGATGAGGTGAAAGCCAAA
GCATTCGAGCCATTTTTCACCACGGCACGCCAAAGTGGTGGCACAGGTTTGGGGATGTCGATTATTTATAATCTGGTCAC
CCAAAAGCTCAATGGTAATGTGTCACTCTTCTCAGCGCCGAATCAGGGGTTACGTATTGAGATGCTGATCCCCGAGCAGT
AG

Upstream 100 bases:

>100_bases
CGCAATCGGGTAAGCAGTTTGACCCCGTATTGTGTGAAGCGAGTTTAAAACTGTTAGATGCGTTTGCCTCCCTACATATC
CATATTCCGGACGAACCGCT

Downstream 100 bases:

>100_bases
CAAGGGTGTATGTTGGTGAGCGCTAGGCTCAGCAAATCCGCTTGTCTTTATTGAATAGCGGATTGATTCATCTTACTGAA
GCTGAATGGCTTTTAGTGCT

Product: GAF sensor signal transduction histidine kinase

Products: NA

Alternate protein names: WHR virA [H]

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MTRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYLLDHQQPQEALVLTRAQFPHY
FSLLDNELTIVANKAQTDPATKEFVDSYLKPNQITSMLDSPIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGR
AMSAKEILEYQQQLKLINTDLEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILERERFNLKNYIFQIFSSLKPL
MRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHAFPDDFAGEKQIVIVVEKEGSQIKMTYQDNGIGMSDEVKAK
AFEPFFTTARQSGGTGLGMSIIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPEQ

Sequences:

>Translated_453_residues
MTRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYLLDHQQPQEALVLTRAQFPHY
FSLLDNELTIVANKAQTDPATKEFVDSYLKPNQITSMLDSPIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGR
AMSAKEILEYQQQLKLINTDLEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILERERFNLKNYIFQIFSSLKPL
MRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHAFPDDFAGEKQIVIVVEKEGSQIKMTYQDNGIGMSDEVKAK
AFEPFFTTARQSGGTGLGMSIIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPEQ
>Mature_452_residues
TRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYLLDHQQPQEALVLTRAQFPHYF
SLLDNELTIVANKAQTDPATKEFVDSYLKPNQITSMLDSPIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGRA
MSAKEILEYQQQLKLINTDLEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHCL
DELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILERERFNLKNYIFQIFSSLKPLM
RKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHAFPDDFAGEKQIVIVVEKEGSQIKMTYQDNGIGMSDEVKAKA
FEPFFTTARQSGGTGLGMSIIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPEQ

Specific function: Activates virG, by phosphorylating it, in the presence of acetosyringone or hydroxysyringone [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=296, Percent_Identity=28.0405405405405, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693157, Length=240, Percent_Identity=24.5833333333333, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 50858; Mature: 50727

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00018 EF_HAND_1 ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYL
CHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEECEEEEEECCCCEEEEEEE
LDHQQPQEALVLTRAQFPHYFSLLDNELTIVANKAQTDPATKEFVDSYLKPNQITSMLDS
ECCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHH
PIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGRAMSAKEILEYQQQLKLINTD
HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
LEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
CHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RERFNLKNYIFQIFSSLKPLMRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHA
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHC
FPDDFAGEKQIVIVVEKEGSQIKMTYQDNGIGMSDEVKAKAFEPFFTTARQSGGTGLGMS
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCHHHHHHHCCCCCCHHHH
IIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPEQ
HHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC
>Mature Secondary Structure 
TRMLDRILFDVSKSQVIDEGDLIQASQLIVSSICKGLQITRAGIWLFGQDNQTIACYYL
HHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEECEEEEEECCCCEEEEEEE
LDHQQPQEALVLTRAQFPHYFSLLDNELTIVANKAQTDPATKEFVDSYLKPNQITSMLDS
ECCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHH
PIRHHGKMVGIICSEHQGEAREWTRDEKAFASALADLFGRAMSAKEILEYQQQLKLINTD
HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
LEHQVELRTTELETALSTLKSTQKHLIENEKMAALGSLVAGVAHEVNTPLGIAVTSVTHC
CHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LDELSLLKGSFEKNDLDEDKFVSFINTMQDGLCLIERNLSRAAELVHNFKRTAADQSILE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RERFNLKNYIFQIFSSLKPLMRKKNITLKVELDDNIFIDSYPGAIAQIFTNLVANSFRHA
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHHHHHC
FPDDFAGEKQIVIVVEKEGSQIKMTYQDNGIGMSDEVKAKAFEPFFTTARQSGGTGLGMS
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCHHHHHHHCCCCCCHHHH
IIYNLVTQKLNGNVSLFSAPNQGLRIEMLIPEQ
HHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2796735; 2194232; 11743193; 11743194 [H]