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The map label for this gene is ygiD [H]

Identifier: 126175026

GI number: 126175026

Start: 3320217

End: 3321029

Strand: Reverse

Name: ygiD [H]

Synonym: Sbal_2821

Alternate gene names: 126175026

Gene position: 3321029-3320217 (Counterclockwise)

Preceding gene: 126175027

Following gene: 126175024

Centisome position: 64.77

GC content: 50.06

Gene sequence:

>813_bases
ATGCAAGTTAACGCGAGTCGTATGCCTGTGCTATTTGTGCCCCACGGTGGTGGCCCAATGCCTTTGCTAAATGATGCCAA
TCATAAAGAGTTACGTGCTTTTTTAACCTCAGTGACCGCGCCCATTGAAACCCCTAAGGCGATTGTGCTGATCACCGCCC
ATTGGGAAGAATCTGTGGTGACCTTGTCGAGTAGCCCTAAGCCCGGCATTTTATACGACTACTATGGTTTTCCACCCGAA
GCGTATCAGCTGACGTATCCTGCATCGGGTGAGCCAGAATTAGCGGCACAGATTGCGAATATGCTCGCGGATAAGGGTAT
CGCCGCCCGCTTAGATAGCGAGCGCGCATTTGATCACGGCACCTTTGTACCACTTAAGTTGATGTATCCCGAGGCGAATA
TTCCCGTAGTACAAATGTCGTTAGTCCACAGTCTCGATCCTGAAACCCATATAGCGATTGGCGAAGCTTTAGCGCCGCTA
CGGGATCAAGGGGTGTTGATCGTGGGCTCAGGGATGTCGTTTCACAATATGCGGGCGTTTTTTTCAAGCGATCCCACGGT
CCAAAGTCGCAGCGCAGAGTTTGACTATTGGCTGACGCAAACATTAACCGCAAGCGTGAACACTGCCGAGGCCAAAACAG
CATTGATTCACTGGCAAGCCGCCACTGAAGCGCGGTTTAGTCATCCGCGGGAAGAACATTTATTGCCTCTGCATGTGTGT
TTTGGCGCTGGTCACAGTGATTCATCCCAAGCGCTACGTAACTTTAACGGCATTTTATTAAATACACTGATCTCAGGCTA
TATCTGGCAATAA

Upstream 100 bases:

>100_bases
CAGCGGCAGTTGGCGCTAAGTCGCTCCGCATTTTAAGTGATAAAAATAGAGTCTGAAGTCAGTCGTACCGATATAAGTTA
ATCAACAAGAGAAAGCCATG

Downstream 100 bases:

>100_bases
TCTGGCAATAGTCTGATGTTGGATTGCTGTCGTCGAACATGGCAGTAAACCTAAGGCTAAGCATATTCAGCCAATAAAAA
AAGGTTCGTATCCTCGACAG

Product: extradiol ring-cleavage dioxygenase class III protein subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MQVNASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVVTLSSSPKPGILYDYYGFPPE
AYQLTYPASGEPELAAQIANMLADKGIAARLDSERAFDHGTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPL
RDQGVLIVGSGMSFHNMRAFFSSDPTVQSRSAEFDYWLTQTLTASVNTAEAKTALIHWQAATEARFSHPREEHLLPLHVC
FGAGHSDSSQALRNFNGILLNTLISGYIWQ

Sequences:

>Translated_270_residues
MQVNASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVVTLSSSPKPGILYDYYGFPPE
AYQLTYPASGEPELAAQIANMLADKGIAARLDSERAFDHGTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPL
RDQGVLIVGSGMSFHNMRAFFSSDPTVQSRSAEFDYWLTQTLTASVNTAEAKTALIHWQAATEARFSHPREEHLLPLHVC
FGAGHSDSSQALRNFNGILLNTLISGYIWQ
>Mature_270_residues
MQVNASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVVTLSSSPKPGILYDYYGFPPE
AYQLTYPASGEPELAAQIANMLADKGIAARLDSERAFDHGTFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPL
RDQGVLIVGSGMSFHNMRAFFSSDPTVQSRSAEFDYWLTQTLTASVNTAEAKTALIHWQAATEARFSHPREEHLLPLHVC
FGAGHSDSSQALRNFNGILLNTLISGYIWQ

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=243, Percent_Identity=34.156378600823, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29576; Mature: 29576

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVV
CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEE
TLSSSPKPGILYDYYGFPPEAYQLTYPASGEPELAAQIANMLADKGIAARLDSERAFDHG
EECCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCC
TFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPLRDQGVLIVGSGMSFHNMRAF
CEEEEEEECCCCCCCEEEEEHHHHCCCCCEEEHHHHHCCCCCCCEEEEECCCCHHHHHHH
FSSDPTVQSRSAEFDYWLTQTLTASVNTAEAKTALIHWQAATEARFSHPREEHLLPLHVC
HCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECHHHHHHCCCHHHCEEEEEEE
FGAGHSDSSQALRNFNGILLNTLISGYIWQ
ECCCCCCHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQVNASRMPVLFVPHGGGPMPLLNDANHKELRAFLTSVTAPIETPKAIVLITAHWEESVV
CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEE
TLSSSPKPGILYDYYGFPPEAYQLTYPASGEPELAAQIANMLADKGIAARLDSERAFDHG
EECCCCCCCEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCC
TFVPLKLMYPEANIPVVQMSLVHSLDPETHIAIGEALAPLRDQGVLIVGSGMSFHNMRAF
CEEEEEEECCCCCCCEEEEEHHHHCCCCCEEEHHHHHCCCCCCCEEEEECCCCHHHHHHH
FSSDPTVQSRSAEFDYWLTQTLTASVNTAEAKTALIHWQAATEARFSHPREEHLLPLHVC
HCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECHHHHHHCCCHHHCEEEEEEE
FGAGHSDSSQALRNFNGILLNTLISGYIWQ
ECCCCCCHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]