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The map label for this gene is chrR [H]

Identifier: 126174811

GI number: 126174811

Start: 3042076

End: 3042807

Strand: Direct

Name: chrR [H]

Synonym: Sbal_2598

Alternate gene names: 126174811

Gene position: 3042076-3042807 (Clockwise)

Preceding gene: 126174810

Following gene: 126174812

Centisome position: 59.33

GC content: 46.72

Gene sequence:

>732_bases
ATGATTAAGCATCATCCCCAACAAGAATTACTCGTGAGCCATGCGAATGGGGTCTTACCTTTATCGATGGCCATTGCAGT
ATCAGCGCATTGCGCATTATGTGAGACGTGTCGTGAGCAACTAGCCCTATTAACCGAGCAAGCTGCCAATTCGGCATTAA
ATCCAGATGGCGCTCATGCTCATGCTGCAAAGCAGCATATAGGCCAAGAGTTGATTCACACTGCACATATTGATGCTGGA
AACACTCAAGCGACTAATGTACCAGTGATGGATATTGACGATATGCTGGCGCAAATCATGGCTCAGCCTGCGGCGACGGA
TGTGCCTAATAATGCTCCTCTAGATGTTCAAGTAAAACAACAGCATTACACAGTGCCGTCGGTGTTTCGCCAGCATTTGG
CCCGTCCTTGGCAAATCTTAGGCAAAGTCAGTCGTATGCGTTTTGATGTCGATGAAATGAACACCCGCGCGAGCTTATTA
CACATAGATGCGCAAGGTGAAATCCCCCAACATACCCATAAGGGCTATGAGTTAACCCTATTGTTAGCGGGAGCGTTTTC
GGATCTTAACGGTGACTATGTGCCAGGTGATTTTATTGTGCTCGATAGCCAACATCACCACTCACCTAAAACCGTTGACG
GTTGCTTATGCTACACAGTGTTAGATGCGCCGCTGCATTTTACCAAAGGCCTAAGCAAGTTGCTTAACCCCATAGGTGAA
CTGATTTATTAA

Upstream 100 bases:

>100_bases
CAACAAGAGCTAGCCGATGCCCTCAAGGTGCCAATAGGCACCATAAAGTCACGATTAAGACTCGGGCTAGAAAAGTTGAA
AAGTTTCTTGGAGACACACA

Downstream 100 bases:

>100_bases
GCCTGTAGCCAGTGCTTTAACATGACTTATTTACTCCGTTTTAAAATGAGTCCGTTGCTAATTTTTCAGTTACTGAATCT
TCAATTACTAAATTTTCAGT

Product: anti-ECFsigma factor, ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MIKHHPQQELLVSHANGVLPLSMAIAVSAHCALCETCREQLALLTEQAANSALNPDGAHAHAAKQHIGQELIHTAHIDAG
NTQATNVPVMDIDDMLAQIMAQPAATDVPNNAPLDVQVKQQHYTVPSVFRQHLARPWQILGKVSRMRFDVDEMNTRASLL
HIDAQGEIPQHTHKGYELTLLLAGAFSDLNGDYVPGDFIVLDSQHHHSPKTVDGCLCYTVLDAPLHFTKGLSKLLNPIGE
LIY

Sequences:

>Translated_243_residues
MIKHHPQQELLVSHANGVLPLSMAIAVSAHCALCETCREQLALLTEQAANSALNPDGAHAHAAKQHIGQELIHTAHIDAG
NTQATNVPVMDIDDMLAQIMAQPAATDVPNNAPLDVQVKQQHYTVPSVFRQHLARPWQILGKVSRMRFDVDEMNTRASLL
HIDAQGEIPQHTHKGYELTLLLAGAFSDLNGDYVPGDFIVLDSQHHHSPKTVDGCLCYTVLDAPLHFTKGLSKLLNPIGE
LIY
>Mature_243_residues
MIKHHPQQELLVSHANGVLPLSMAIAVSAHCALCETCREQLALLTEQAANSALNPDGAHAHAAKQHIGQELIHTAHIDAG
NTQATNVPVMDIDDMLAQIMAQPAATDVPNNAPLDVQVKQQHYTVPSVFRQHLARPWQILGKVSRMRFDVDEMNTRASLL
HIDAQGEIPQHTHKGYELTLLLAGAFSDLNGDYVPGDFIVLDSQHHHSPKTVDGCLCYTVLDAPLHFTKGLSKLLNPIGE
LIY

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26576; Mature: 26576

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHHPQQELLVSHANGVLPLSMAIAVSAHCALCETCREQLALLTEQAANSALNPDGAHA
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
HAAKQHIGQELIHTAHIDAGNTQATNVPVMDIDDMLAQIMAQPAATDVPNNAPLDVQVKQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCEEEEHH
QHYTVPSVFRQHLARPWQILGKVSRMRFDVDEMNTRASLLHIDAQGEIPQHTHKGYELTL
HCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEE
LLAGAFSDLNGDYVPGDFIVLDSQHHHSPKTVDGCLCYTVLDAPLHFTKGLSKLLNPIGE
EEEECHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LIY
HCC
>Mature Secondary Structure
MIKHHPQQELLVSHANGVLPLSMAIAVSAHCALCETCREQLALLTEQAANSALNPDGAHA
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
HAAKQHIGQELIHTAHIDAGNTQATNVPVMDIDDMLAQIMAQPAATDVPNNAPLDVQVKQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCEEEEHH
QHYTVPSVFRQHLARPWQILGKVSRMRFDVDEMNTRASLLHIDAQGEIPQHTHKGYELTL
HCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCCCCCCCEEEEE
LLAGAFSDLNGDYVPGDFIVLDSQHHHSPKTVDGCLCYTVLDAPLHFTKGLSKLLNPIGE
EEEECHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LIY
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]