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The map label for this gene is sigK [H]

Identifier: 126174810

GI number: 126174810

Start: 3041421

End: 3042083

Strand: Direct

Name: sigK [H]

Synonym: Sbal_2597

Alternate gene names: 126174810

Gene position: 3041421-3042083 (Clockwise)

Preceding gene: 126174809

Following gene: 126174811

Centisome position: 59.32

GC content: 45.4

Gene sequence:

>663_bases
ATGGAAAATATTCAATCACAAAGCAGGCAAAATCGGTATCATGGCCCTATCACGTCTCTGACTCATTCGGCTATGGATAA
CGACATTCCCGCTCTCAAAACCTGCGAGCCTCAAGCGGATACTTTGATCACGTTTATGCTACAAGTAGCTGACAAACGGG
ACAGAGCCGCCTTTGGGCATTTATTCCAGCATTTTATGCCCAAGATCCGCGCCTTTGGTTTACAAAGACTGAATCAACAA
GGCTTAGCCATGGATTTAGTTCAAGAAACCATGACCAGCGTGTGGACTAAGGCCCATCTGTACAATGCAGATAAAGGCTC
AGTGACGACTTGGGTATTTACCATAATGCGTAATCAGTGTTTCGATATGCTGAGACGAGTACAACACAATAAAGAAGATA
CCTTTGGCGATGATATTTGGCCGCTGTGCGATGCGACCATGGCTCAAGACACACTCACTGATCATAAATTGACGGCGAAA
CTCCTCCAACATCTTGATGCCCTTCCCCTCGCACAAAGACAAGTCGTGCAAGGTATCTACATGCAAGAACTCACTCAACA
AGAGCTAGCCGATGCCCTCAAGGTGCCAATAGGCACCATAAAGTCACGATTAAGACTCGGGCTAGAAAAGTTGAAAAGTT
TCTTGGAGACACACAATGATTAA

Upstream 100 bases:

>100_bases
GTTTGACAGTAAAACTGGGCTCAGAAGTGAAACAAGCCTCTCAATTTTGTCGTTACTGATCTCAAACTTAGCACTAACGA
CTGGGATAAGAGCGAAAATA

Downstream 100 bases:

>100_bases
GCATCATCCCCAACAAGAATTACTCGTGAGCCATGCGAATGGGGTCTTACCTTTATCGATGGCCATTGCAGTATCAGCGC
ATTGCGCATTATGTGAGACG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MENIQSQSRQNRYHGPITSLTHSAMDNDIPALKTCEPQADTLITFMLQVADKRDRAAFGHLFQHFMPKIRAFGLQRLNQQ
GLAMDLVQETMTSVWTKAHLYNADKGSVTTWVFTIMRNQCFDMLRRVQHNKEDTFGDDIWPLCDATMAQDTLTDHKLTAK
LLQHLDALPLAQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETHND

Sequences:

>Translated_220_residues
MENIQSQSRQNRYHGPITSLTHSAMDNDIPALKTCEPQADTLITFMLQVADKRDRAAFGHLFQHFMPKIRAFGLQRLNQQ
GLAMDLVQETMTSVWTKAHLYNADKGSVTTWVFTIMRNQCFDMLRRVQHNKEDTFGDDIWPLCDATMAQDTLTDHKLTAK
LLQHLDALPLAQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETHND
>Mature_220_residues
MENIQSQSRQNRYHGPITSLTHSAMDNDIPALKTCEPQADTLITFMLQVADKRDRAAFGHLFQHFMPKIRAFGLQRLNQQ
GLAMDLVQETMTSVWTKAHLYNADKGSVTTWVFTIMRNQCFDMLRRVQHNKEDTFGDDIWPLCDATMAQDTLTDHKLTAK
LLQHLDALPLAQRQVVQGIYMQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETHND

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 25222; Mature: 25222

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIQSQSRQNRYHGPITSLTHSAMDNDIPALKTCEPQADTLITFMLQVADKRDRAAFGH
CCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LFQHFMPKIRAFGLQRLNQQGLAMDLVQETMTSVWTKAHLYNADKGSVTTWVFTIMRNQC
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
FDMLRRVQHNKEDTFGDDIWPLCDATMAQDTLTDHKLTAKLLQHLDALPLAQRQVVQGIY
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETHND
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENIQSQSRQNRYHGPITSLTHSAMDNDIPALKTCEPQADTLITFMLQVADKRDRAAFGH
CCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LFQHFMPKIRAFGLQRLNQQGLAMDLVQETMTSVWTKAHLYNADKGSVTTWVFTIMRNQC
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
FDMLRRVQHNKEDTFGDDIWPLCDATMAQDTLTDHKLTAKLLQHLDALPLAQRQVVQGIY
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MQELTQQELADALKVPIGTIKSRLRLGLEKLKSFLETHND
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA