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The map label for this gene is ssaJ [H]

Identifier: 126174186

GI number: 126174186

Start: 2274971

End: 2275690

Strand: Direct

Name: ssaJ [H]

Synonym: Sbal_1962

Alternate gene names: 126174186

Gene position: 2274971-2275690 (Clockwise)

Preceding gene: 126174185

Following gene: 126174187

Centisome position: 44.37

GC content: 44.44

Gene sequence:

>720_bases
ATGAAATATTTTAAATGGTCAATATTGTTGCTCGTCTTCGCGTTGACTGGGTGCAAAGTCGATCTCTATCGAGATCTTCC
CCAAGATGAAGCGAATCAAATGGTTGCCCTGTTGATGCTCAATCACATAGATGCCAGTGCGGAAGCAGATCAAAAATCAG
GCAATGTGTCTCTAAAAATAGAGAAAGACCAATTTATCAATGCCGTTGAATTACTGAGGCAAAATGGCTTTCCTAAACCT
CATTATGCCAATATCGAGGATTTGTTTCCTTCGGGTCAGTTAGTGACTTCACCCGCCCAAGAGGAAGCGAAAATGGGTTA
TCTAAAAGAGCAGCAACTCGAGCGTACCTTGTCGAGTATGGATGGGGTGATCAGCGCTAGAGTGTCTATTGCCGAACCTG
CACCCGACACCGGGCGTCAGCTTGCACAAACTAAGTCGGCCTCTGTATACATTAAATATTCACCTCAGGCTAACTTAACA
AATACGGAAAATCAGATTAAGAGCTTAGTGCAGAATGCCGTTCCAGGACTGAGCTACGACAATATCAGTGTCTTTTTGCA
AGCCGCAAGTTATCGCTATCAAGCCATTACTCAGCCCACTAGCAGTAGTTCATCCCAATTATTAGCCCAGGTCGAAGCGT
ACAAGTTGCCGTTAGTGATCAGCTTATCGGGAATAATGCTATTCAGCATTGGCGGTATGTGGTGGATGAGACGCAAATAA

Upstream 100 bases:

>100_bases
GCGGACAGCTCTTGATGGGTAAAGCCATTGTTGAGGTCGATCTAGCGGCAAAGACTGCTGGCGCCTTATCCCAATCCATA
AACAAATTGGTGAATATGCA

Downstream 100 bases:

>100_bases
ACATAACAATTGTTTCTGGAGGAACTATGGACGACTTGACCTCTAATCTACCACGAACATGGGGCGAAGCGACTGGTCAA
AACACGTTAAATCGAGTGTT

Product: YscJ/HrcJ family type III secretion apparatus lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK

Sequences:

>Translated_239_residues
MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK
>Mature_239_residues
MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK

Specific function: Unknown

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 26587; Mature: 26587

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKI
CCCHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
EKDQFINAVELLRQNGFPKPHYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSM
CHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEECCCHHHHHHCHHHHHHHHHHHHHH
DGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYD
HHHHHHEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
NISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK
CHHHEEEHHHHHEEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKI
CCCHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
EKDQFINAVELLRQNGFPKPHYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSM
CHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEECCCHHHHHHCHHHHHHHHHHHHHH
DGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYD
HHHHHHEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
NISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK
CHHHEEEHHHHHEEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140973; 11677609 [H]