Click here to switch to the map view.

The map label for this gene is hypA [H]

Identifier: 126174105

GI number: 126174105

Start: 2178770

End: 2179123

Strand: Reverse

Name: hypA [H]

Synonym: Sbal_1879

Alternate gene names: 126174105

Gene position: 2179123-2178770 (Counterclockwise)

Preceding gene: 126174106

Following gene: 126174098

Centisome position: 42.5

GC content: 51.98

Gene sequence:

>354_bases
ATGCACGAATATTCGATTGTGAGTGCCCTGATTGAGCAATGCGAGCAGCACGCGCTGGCCAATCATGCCGCTAAAATCAC
CCGAGTGGATATCAAACTGGGGGTGATGAGCGGGGTTGAGCCTAGCCTGCTGCAAACCGCCTTCGATACGTTTAAGCTCG
ATGGCATTTGCAAAGCAGCCCAGCTCAACATCCAAATTCAGCCCTTAGTGATTCTTTGCCAAGACTGCCAGAGCGAATCC
GTGCTGAGTGAACGCACCATCGTCTGCCCAGCGTGTCAAAGCTATCGCACCCGCGTTCTCGATGGCGAAGACATGCTACT
GATGCAACTTGAAATGGAGCAAGAAGAGGATTAA

Upstream 100 bases:

>100_bases
TGAGTGATGAACTGGCAGGAAAAGTCGTGCTAAGAACGCCTTGGAATACCAAGCGTTATCTCGATCTTCCCCAAGGTGAA
CTGCTGCCAAGGATTTGCTG

Downstream 100 bases:

>100_bases
AGAATGTGAACGCCAATAGATACTGTTGTGCACAGCATCGACTTGTCATGAGGCCATGTCACACAGATTGTCAGATTCAC
ATTCCACTTTAGGGCTAAAT

Product: hydrogenase nickel insertion protein HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MHEYSIVSALIEQCEQHALANHAAKITRVDIKLGVMSGVEPSLLQTAFDTFKLDGICKAAQLNIQIQPLVILCQDCQSES
VLSERTIVCPACQSYRTRVLDGEDMLLMQLEMEQEED

Sequences:

>Translated_117_residues
MHEYSIVSALIEQCEQHALANHAAKITRVDIKLGVMSGVEPSLLQTAFDTFKLDGICKAAQLNIQIQPLVILCQDCQSES
VLSERTIVCPACQSYRTRVLDGEDMLLMQLEMEQEED
>Mature_117_residues
MHEYSIVSALIEQCEQHALANHAAKITRVDIKLGVMSGVEPSLLQTAFDTFKLDGICKAAQLNIQIQPLVILCQDCQSES
VLSERTIVCPACQSYRTRVLDGEDMLLMQLEMEQEED

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR004039 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 13083; Mature: 13083

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEYSIVSALIEQCEQHALANHAAKITRVDIKLGVMSGVEPSLLQTAFDTFKLDGICKAA
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
QLNIQIQPLVILCQDCQSESVLSERTIVCPACQSYRTRVLDGEDMLLMQLEMEQEED
EECEEECHHEEEECCCCCCCHHCCCEEECCCCHHHHHEECCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MHEYSIVSALIEQCEQHALANHAAKITRVDIKLGVMSGVEPSLLQTAFDTFKLDGICKAA
CCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
QLNIQIQPLVILCQDCQSESVLSERTIVCPACQSYRTRVLDGEDMLLMQLEMEQEED
EECEEECHHEEEECCCCCCCHHCCCEEECCCCHHHHHEECCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA