| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is pheT [H]
Identifier: 126174100
GI number: 126174100
Start: 2173429
End: 2175816
Strand: Direct
Name: pheT [H]
Synonym: Sbal_1874
Alternate gene names: 126174100
Gene position: 2173429-2175816 (Clockwise)
Preceding gene: 126174099
Following gene: 126174101
Centisome position: 42.39
GC content: 48.07
Gene sequence:
>2388_bases ATGAAATTTAGCGAATCTTGGCTTCGTGAATGGGTAAACCCTTCAGTCAGCCGTGAAGCATTATCGCACCAGATCACTAT GGCCGGTCTCGAAGTCGATGACGTTGAAGCCGTAGCAGCCGATTTTAGCGGTGTCGTGATTGGTGAAGTGGTTGAGTGTG GTCAGCATCCCGATGCTGATAAACTGCGCGTGACCAAAATCAACGTTGGTGGTAGCGAACTTATCGATATCGTCTGCGGT GCACCAAACTGCCGTCAGGGCCTTAAAGTGGCCGTGGCTATGGTTGGTGCTGTTTTACCTGGCGATTTCAAAATCAAGAA AGCTAAGCTGCGTGGCATGCCATCAGAAGGCATGTTGTGCTCGTACAGCGAGCTTGGCATTAACGTCGAAAGCGATGGCA TTATCGAATTGCCATTGGACGCGCCACTTGGCACTGACATCCGCGATTATCTGCAACTTAATGATGCCGTTATCGATGTG GATTTAACGGCTAACCGCGCCGATTGCTTAGGCATGGCAGGCCTTGCCCGTGAAGTGGGCGTGTTAAACCGCCAAGCCGT GGTTGAGCCACAGTGGCAAGCCGTCACGGCAACGACAGATGCACAAGTCACGATTAACGTTAAGGCGCCAGACGCTTGTC CACGTTACTTAGGCCGTGTGGTTAAAAACGTCAATGTTAAAGCGCCTACGCCATTATGGATGCAGGAAAAACTGCGCCGT AGCGGTATTCGCTCTATCGATCCTATCGTTGATATCACTAACTTTGTGTTGATTGAATTCGGTCAACCTATGCACGCTTT CGATCTTGCCAAGTTAACGGGCGATATCCAAGTGCGTTTAGGCACTGGCGAAGAGAAAATCACCCTGCTTGATGGCAGCG AAGTGACCATCCCAAGCGATACCTTAGTGATCGCCGATGATGCGCGTCCATTAGCCCTTGCAGGCGTGTTTGGCGGCGAA TATTCAGGCGTGAGTGACACGACCCAAGACATACTGCTTGAATGTGCGTTCTTCGCGCCTCTTGCCATTATGGGTAAGTC ACGTCGTTTAGGCTTGCACACAGATTCATCACACCGCTTTGAGCGTGGCGTTGACCCTGAGATGCAGCACAAGGTTATCG ACCGTGCGACCCTTTTAGTGCTGGATATCTGTGGCGGTGAAGCGGGCCCTGTAGTTGAAGCTAAATCAGAGGCTGATTTA CCTAAACCTGCACAAATCGTGTTACGTCGCAGCAAGTTAGATAGAATTTTAGGTCACCATGTGCCAGACACAGATGTGGT CGAAATTCTACAACGTCTCGGCTTCAGTGTGGTTGTGGGCCAAGATAGCTGGCAGGTCACCACTGCGACTTATCGTTTCG ATATGGCGATTGAAGAAGATTTGATTGAAGAAGTGGCGCGTATTTACGGTTATAACAATATCCCGAATATCGCACCCGTT GCCGCGCTGCGCATGTCAGATCATAAAGAATCTGACTTAAGCTTAAAACGCGTGCGTGCCTTATTAGTCGCTCGTGGCTT CCAAGAAGCGGTAACCTATAGCTTTGTCGATCCAAAACTGCAAAATCTGGTTCACCCTGGTTTAGACGCTATGGTGTTAC CAAACCCAATTTCCAGTGAAATGTCGGCCATGCGCCTGTCAATGTTCACCGGTTTATTGGCCGCCGTTGGCTACAACCAA AGTCGTCAACAGAGTCGCGTGAGACTTTTTGAAACTGGCCTGCGCTTTGTTCCTGATATCAATGCAGAATCCGGTGTAAG ACAGCAAGCAATGCTCGCTTGTGTCATTACTGGGCTCCAAAATGATGAACATTGGGCTATGGAATCGAAAACTGTTGATT TTTTCGACCTTAAAGGTGATTTAGAAGCAATTATCGGCTTGACAGTTTCCGCATCAGAATTTAGCTTTAGAGGAGCGACG CATTCTGCTCTCCATCCGGGGCAATGTGCTGAAATATTGAGAAATGATCGAGTGATCGGTCATATAGGTGCAATCCATCC TAGTTTGGAGAAGCCTTTTGGACTCAATGGTAAAACCATCGTTTTTGAGTTGGAATTGGATGCTTTATTGCATACCAGTT TGCCGCTAGCCCAAGCTGTATCTAAGTTTCCAGCTAATCGTCGTGACATCGCAGTCGTAGTAGATGAGAGTGTATCTGCA GGTGATGTAATGAAATTGATAAGAAAAGTTGGCGAAAATCAGTTGGTTGGCATAAACTTGTTCGATGTATACTTAGGTAA AGGTGTTGAACCTGGCAAGAAGAGCCTGGCGATAGCACTTACATTACAAGACACTACTCGTACGCTTGAGGAAAAAGAGA TTGCTGAGACCGTTGGTTCAGTCGTTTCTGCCCTTAAGTCCGAGTTCAACGCATCGTTGAGGGATTAA
Upstream 100 bases:
>100_bases GCGCTTAACTATGTTGCGTTACGGCGTAAACGATTTACGTGCGTTTTTCGAAAACGACCTACGTTTCCTGAAGCAATTTA AATAACGGAGCTGTAATAGC
Downstream 100 bases:
>100_bases AGTATGGCACTTACCAAAGCCGAAATGGCAGAACATCTTTTTGAAACACTCGGAATGAACAAACGTGTCGCCAAAGAGAT GGTTGAGTCGTTCTTTGAAG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MKFSESWLREWVNPSVSREALSHQITMAGLEVDDVEAVAADFSGVVIGEVVECGQHPDADKLRVTKINVGGSELIDIVCG APNCRQGLKVAVAMVGAVLPGDFKIKKAKLRGMPSEGMLCSYSELGINVESDGIIELPLDAPLGTDIRDYLQLNDAVIDV DLTANRADCLGMAGLAREVGVLNRQAVVEPQWQAVTATTDAQVTINVKAPDACPRYLGRVVKNVNVKAPTPLWMQEKLRR SGIRSIDPIVDITNFVLIEFGQPMHAFDLAKLTGDIQVRLGTGEEKITLLDGSEVTIPSDTLVIADDARPLALAGVFGGE YSGVSDTTQDILLECAFFAPLAIMGKSRRLGLHTDSSHRFERGVDPEMQHKVIDRATLLVLDICGGEAGPVVEAKSEADL PKPAQIVLRRSKLDRILGHHVPDTDVVEILQRLGFSVVVGQDSWQVTTATYRFDMAIEEDLIEEVARIYGYNNIPNIAPV AALRMSDHKESDLSLKRVRALLVARGFQEAVTYSFVDPKLQNLVHPGLDAMVLPNPISSEMSAMRLSMFTGLLAAVGYNQ SRQQSRVRLFETGLRFVPDINAESGVRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRGAT HSALHPGQCAEILRNDRVIGHIGAIHPSLEKPFGLNGKTIVFELELDALLHTSLPLAQAVSKFPANRRDIAVVVDESVSA GDVMKLIRKVGENQLVGINLFDVYLGKGVEPGKKSLAIALTLQDTTRTLEEKEIAETVGSVVSALKSEFNASLRD
Sequences:
>Translated_795_residues MKFSESWLREWVNPSVSREALSHQITMAGLEVDDVEAVAADFSGVVIGEVVECGQHPDADKLRVTKINVGGSELIDIVCG APNCRQGLKVAVAMVGAVLPGDFKIKKAKLRGMPSEGMLCSYSELGINVESDGIIELPLDAPLGTDIRDYLQLNDAVIDV DLTANRADCLGMAGLAREVGVLNRQAVVEPQWQAVTATTDAQVTINVKAPDACPRYLGRVVKNVNVKAPTPLWMQEKLRR SGIRSIDPIVDITNFVLIEFGQPMHAFDLAKLTGDIQVRLGTGEEKITLLDGSEVTIPSDTLVIADDARPLALAGVFGGE YSGVSDTTQDILLECAFFAPLAIMGKSRRLGLHTDSSHRFERGVDPEMQHKVIDRATLLVLDICGGEAGPVVEAKSEADL PKPAQIVLRRSKLDRILGHHVPDTDVVEILQRLGFSVVVGQDSWQVTTATYRFDMAIEEDLIEEVARIYGYNNIPNIAPV AALRMSDHKESDLSLKRVRALLVARGFQEAVTYSFVDPKLQNLVHPGLDAMVLPNPISSEMSAMRLSMFTGLLAAVGYNQ SRQQSRVRLFETGLRFVPDINAESGVRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRGAT HSALHPGQCAEILRNDRVIGHIGAIHPSLEKPFGLNGKTIVFELELDALLHTSLPLAQAVSKFPANRRDIAVVVDESVSA GDVMKLIRKVGENQLVGINLFDVYLGKGVEPGKKSLAIALTLQDTTRTLEEKEIAETVGSVVSALKSEFNASLRD >Mature_795_residues MKFSESWLREWVNPSVSREALSHQITMAGLEVDDVEAVAADFSGVVIGEVVECGQHPDADKLRVTKINVGGSELIDIVCG APNCRQGLKVAVAMVGAVLPGDFKIKKAKLRGMPSEGMLCSYSELGINVESDGIIELPLDAPLGTDIRDYLQLNDAVIDV DLTANRADCLGMAGLAREVGVLNRQAVVEPQWQAVTATTDAQVTINVKAPDACPRYLGRVVKNVNVKAPTPLWMQEKLRR SGIRSIDPIVDITNFVLIEFGQPMHAFDLAKLTGDIQVRLGTGEEKITLLDGSEVTIPSDTLVIADDARPLALAGVFGGE YSGVSDTTQDILLECAFFAPLAIMGKSRRLGLHTDSSHRFERGVDPEMQHKVIDRATLLVLDICGGEAGPVVEAKSEADL PKPAQIVLRRSKLDRILGHHVPDTDVVEILQRLGFSVVVGQDSWQVTTATYRFDMAIEEDLIEEVARIYGYNNIPNIAPV AALRMSDHKESDLSLKRVRALLVARGFQEAVTYSFVDPKLQNLVHPGLDAMVLPNPISSEMSAMRLSMFTGLLAAVGYNQ SRQQSRVRLFETGLRFVPDINAESGVRQQAMLACVITGLQNDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRGAT HSALHPGQCAEILRNDRVIGHIGAIHPSLEKPFGLNGKTIVFELELDALLHTSLPLAQAVSKFPANRRDIAVVVDESVSA GDVMKLIRKVGENQLVGINLFDVYLGKGVEPGKKSLAIALTLQDTTRTLEEKEIAETVGSVVSALKSEFNASLRD
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=795, Percent_Identity=63.5220125786163, Blast_Score=1029, Evalue=0.0, Organism=Caenorhabditis elegans, GI17533403, Length=570, Percent_Identity=22.1052631578947, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI21355211, Length=572, Percent_Identity=21.6783216783217, Blast_Score=80, Evalue=8e-15,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 86384; Mature: 86384
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSESWLREWVNPSVSREALSHQITMAGLEVDDVEAVAADFSGVVIGEVVECGQHPDAD CCCCHHHHHHHCCCCHHHHHHHHEEEEECCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCC KLRVTKINVGGSELIDIVCGAPNCRQGLKVAVAMVGAVLPGDFKIKKAKLRGMPSEGMLC CEEEEEEECCHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCCEE SYSELGINVESDGIIELPLDAPLGTDIRDYLQLNDAVIDVDLTANRADCLGMAGLAREVG EHHHHCCEECCCCEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHH VLNRQAVVEPQWQAVTATTDAQVTINVKAPDACPRYLGRVVKNVNVKAPTPLWMQEKLRR HCCCCEECCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH SGIRSIDPIVDITNFVLIEFGQPMHAFDLAKLTGDIQVRLGTGEEKITLLDGSEVTIPSD CCCCCCCHHHHHHCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCEEEEECCCEEECCCC TLVIADDARPLALAGVFGGEYSGVSDTTQDILLECAFFAPLAIMGKSRRLGLHTDSSHRF EEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHH ERGVDPEMQHKVIDRATLLVLDICGGEAGPVVEAKSEADLPKPAQIVLRRSKLDRILGHH HCCCCHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCC VPDTDVVEILQRLGFSVVVGQDSWQVTTATYRFDMAIEEDLIEEVARIYGYNNIPNIAPV CCCHHHHHHHHHCCCEEEEECCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHH AALRMSDHKESDLSLKRVRALLVARGFQEAVTYSFVDPKLQNLVHPGLDAMVLPNPISSE HHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHCCCCCEEECCCCCHHH MSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESGVRQQAMLACVITGLQ HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHCCC NDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRGATHSALHPGQCAEILRNDRVIG CCCCCEECCCCEEEEECCCCHHHHEEEEEECCCCEECCCCCCCCCCHHHHHHHHCCCEEE HIGAIHPSLEKPFGLNGKTIVFELELDALLHTSLPLAQAVSKFPANRRDIAVVVDESVSA ECCCCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCH GDVMKLIRKVGENQLVGINLFDVYLGKGVEPGKKSLAIALTLQDTTRTLEEKEIAETVGS HHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH VVSALKSEFNASLRD HHHHHHHHHCCCCCC >Mature Secondary Structure MKFSESWLREWVNPSVSREALSHQITMAGLEVDDVEAVAADFSGVVIGEVVECGQHPDAD CCCCHHHHHHHCCCCHHHHHHHHEEEEECCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCC KLRVTKINVGGSELIDIVCGAPNCRQGLKVAVAMVGAVLPGDFKIKKAKLRGMPSEGMLC CEEEEEEECCHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCCEE SYSELGINVESDGIIELPLDAPLGTDIRDYLQLNDAVIDVDLTANRADCLGMAGLAREVG EHHHHCCEECCCCEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHH VLNRQAVVEPQWQAVTATTDAQVTINVKAPDACPRYLGRVVKNVNVKAPTPLWMQEKLRR HCCCCEECCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH SGIRSIDPIVDITNFVLIEFGQPMHAFDLAKLTGDIQVRLGTGEEKITLLDGSEVTIPSD CCCCCCCHHHHHHCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCEEEEECCCEEECCCC TLVIADDARPLALAGVFGGEYSGVSDTTQDILLECAFFAPLAIMGKSRRLGLHTDSSHRF EEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHH ERGVDPEMQHKVIDRATLLVLDICGGEAGPVVEAKSEADLPKPAQIVLRRSKLDRILGHH HCCCCHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCC VPDTDVVEILQRLGFSVVVGQDSWQVTTATYRFDMAIEEDLIEEVARIYGYNNIPNIAPV CCCHHHHHHHHHCCCEEEEECCCCEEEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHH AALRMSDHKESDLSLKRVRALLVARGFQEAVTYSFVDPKLQNLVHPGLDAMVLPNPISSE HHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHCCCCCEEECCCCCHHH MSAMRLSMFTGLLAAVGYNQSRQQSRVRLFETGLRFVPDINAESGVRQQAMLACVITGLQ HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHCCC NDEHWAMESKTVDFFDLKGDLEAIIGLTVSASEFSFRGATHSALHPGQCAEILRNDRVIG CCCCCEECCCCEEEEECCCCHHHHEEEEEECCCCEECCCCCCCCCCHHHHHHHHCCCEEE HIGAIHPSLEKPFGLNGKTIVFELELDALLHTSLPLAQAVSKFPANRRDIAVVVDESVSA ECCCCCCCCCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCH GDVMKLIRKVGENQLVGINLFDVYLGKGVEPGKKSLAIALTLQDTTRTLEEKEIAETVGS HHHHHHHHHCCCCCEEEEEEEEHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH VVSALKSEFNASLRD HHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]