Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 126174081

GI number: 126174081

Start: 2154816

End: 2155757

Strand: Reverse

Name: rbgA [H]

Synonym: Sbal_1855

Alternate gene names: 126174081

Gene position: 2155757-2154816 (Counterclockwise)

Preceding gene: 126174082

Following gene: 126174079

Centisome position: 42.04

GC content: 48.83

Gene sequence:

>942_bases
ATGGCAATTCAGTGGTATCCAGGGCATATGCACAAGGCACGCAAAGAGATTGAAGAGGCAATGCCTCAAGTCGATCTTGT
TATCGAAGTGCTGGACGCGCGTATTCCCTACAGTAGCGAAAACCCCATGGTGGCTCAGCTTCGAGGCGACAAACCTTGTA
TCAAACTGCTCAATAAATCCGATCTGGCCGATCCAGAGATCACAGCGCAATGGATTGAATACTTAGAGCGTGAACAAGGC
GTAAAAGCCACGGCGATCACCACACTGCAAGCGGCAATGGTGAAAAAGATCCCTGATATCTGCCGTAAGCTAGTGCCGAG
TCGCGATAAAACAGAAAAAGACATTCGCACTATGATCATGGGGATCCCCAACGTCGGAAAATCCACCATCATCAATACCT
TAGCTGGCCGTGTTATCGCCAAAACAGGTAACGAACCTGCGGTGACCAAAACCCAGCAAAGGATCAATTTACGTAACGGT
ATCGTACTCTCGGACACCCCAGGGATTTTGTGGCCCAAAGTGGATAACGAAGCCAGCAGCTATCGCCTCGCCGTCACTGG
TGCCATTAAAGATACCGCAATGGAATATGAAGATGTAGCCCTGTTCGCTGCTAAGTATTTCTTAACCGCTTATCCAAAAG
AGATTTGTGAGCGCTACAATCTCACTGAATTACCAAAGGATGATGTGGCTTTACTCGAAGCGATTGGCCGTAAACGTGGC
GCACTACGTCCCGGTGGTCGCATCGATATGCACAAGGCATCTGAGTTATTGCTGCATGAATACCGCTCAGGCAAAATCGG
CCTCCTTTCGTTAGAAACGCCAGCGATGGCCGAGCTTGAGAAGATTGAAGTCGCCCGCATCATGGCCATAAAAGAAGCCG
AGAAAGAAGCCAAACTGGCGAATGAAAAACTGAAACGTTCAGGCAAACGCCATAACGACTAA

Upstream 100 bases:

>100_bases
GATTAAGCGATTAAAGCGCCTTAGGGCGCTTTTTTTATGACATTCGCCACCTTCAAGGTAGAATAGCCGTTCTTTAAGTT
ATTTAGGACAAGGCGTTATC

Downstream 100 bases:

>100_bases
GCCATCACGACTAAATCAGCTTGCGACTCTGCGAGCGTTGAAAATAACGCGCGGAGTGTGTTGAAGATAAGGCGCTGATG
ACTTTGATATTCAAGCTTAT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQG
VKATAITTLQAAMVKKIPDICRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLTELPKDDVALLEAIGRKRG
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAIKEAEKEAKLANEKLKRSGKRHND

Sequences:

>Translated_313_residues
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQG
VKATAITTLQAAMVKKIPDICRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLTELPKDDVALLEAIGRKRG
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAIKEAEKEAKLANEKLKRSGKRHND
>Mature_312_residues
AIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKSDLADPEITAQWIEYLEREQGV
KATAITTLQAAMVKKIPDICRKLVPSRDKTEKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGI
VLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLTELPKDDVALLEAIGRKRGA
LRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAIKEAEKEAKLANEKLKRSGKRHND

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=210, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI7019419, Length=258, Percent_Identity=25.5813953488372, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI296317324, Length=320, Percent_Identity=25, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI9506611, Length=320, Percent_Identity=25, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI45593130, Length=278, Percent_Identity=23.7410071942446, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI45643129, Length=278, Percent_Identity=23.7410071942446, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI45643127, Length=278, Percent_Identity=23.7410071942446, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17534827, Length=275, Percent_Identity=31.2727272727273, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI32563985, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71990926, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32563983, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25143545, Length=283, Percent_Identity=24.0282685512367, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=283, Percent_Identity=24.0282685512367, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320842, Length=305, Percent_Identity=28.5245901639344, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6324381, Length=269, Percent_Identity=27.1375464684015, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323744, Length=241, Percent_Identity=30.2904564315353, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85815858, Length=302, Percent_Identity=28.476821192053, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI19922460, Length=304, Percent_Identity=25.9868421052632, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35025; Mature: 34894

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKS
CEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHCCC
DLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDICRKLVPSRDKTEKDIRTMIM
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEASS
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLTELPKDDVALLEAIGRKRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAIKEAEKEAKLA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NEKLKRSGKRHND
HHHHHHCCCCCCC
>Mature Secondary Structure 
AIQWYPGHMHKARKEIEEAMPQVDLVIEVLDARIPYSSENPMVAQLRGDKPCIKLLNKS
EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHCCC
DLADPEITAQWIEYLEREQGVKATAITTLQAAMVKKIPDICRKLVPSRDKTEKDIRTMIM
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GIPNVGKSTIINTLAGRVIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEASS
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCC
YRLAVTGAIKDTAMEYEDVALFAAKYFLTAYPKEICERYNLTELPKDDVALLEAIGRKRG
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
ALRPGGRIDMHKASELLLHEYRSGKIGLLSLETPAMAELEKIEVARIMAIKEAEKEAKLA
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NEKLKRSGKRHND
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]