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The map label for this gene is hdfR [H]

Identifier: 126174076

GI number: 126174076

Start: 2150001

End: 2150870

Strand: Direct

Name: hdfR [H]

Synonym: Sbal_1850

Alternate gene names: 126174076

Gene position: 2150001-2150870 (Clockwise)

Preceding gene: 126174072

Following gene: 126174078

Centisome position: 41.93

GC content: 50.92

Gene sequence:

>870_bases
ATGGATACCGATTTACTGAAAACCTTTCTTGAAGTCTCCCGTACTCGCCATTTCGGTAAAGCGGCCGAGAATCTGTATCT
CACGCGCAGTGCCGTGAGTTTTCGAGTCAAACAGCTTGAGAGCATTTTAGGCGTCGCGCTGTTTGAGCGGCAGCGTAATA
ACATTCAGCCCACACCCGCAGGCGAGCGCATGCTTGGCCATGCCGAGGCGGTATTGACTGCGTGGGAGCGGGCTAAACAA
GATGTTTCCCTTAGTCAGTTACAGTCGACTCAGCTTGCCATTGGTGCAGGGCCGAATATTTGGGATGCCTATTTGCAAGG
TTATTTACAGGGATTGCACGTGGGGCTGCCCGGCGTTGCGCTGCGCACCGAAGTGTTGCCAGCCAATGCGATGACGCGCC
AATTAATGGACCGCACCCTCGATATCGCGATTTCATTCGATCCGCCAAAGCTTGATCAATTTGAATTAGTGCAGCTGGGG
CAAATTAATTTGTTGTTGGTTTCGAGCCTAAAAGGTCAAACGGGGACTGCCGTGCTGCCGGGGCAATATGTGAAAGTGGA
TTGGGGGACGGCGTTTAATATTGTGCATGCGCAAGAATATGCGTCGCTGCCTGTTCCTACACTGCACACGAGCTCTGCGC
GTATCGCCTTGGATTTCATCTTAAATAATGGTGGTTGTGCTTTCTTACCCGAGCATTTGGTGCAGCATGCTTTGCACAGT
GGCGAATTGCATCACGTCAGTGGCGCCAGCGCCATTTCAAGAAATGTGTATGTTGCCTATTGGGCGGAAAATGATCGTTT
AGCCCAGATCAAACAAGCCATCGACTTTTTAAGGGACGATGGCTCAGTGTTTGCTCATGCGACTATCTAA

Upstream 100 bases:

>100_bases
CCCTCTAGTTTTTGATATACAAAGATTTGCAACTGGAGTATTGGCTAGTATTATTGATTTATAAATCAAAAAAATTTGCC
TATGTTGGTCAAGAATTTTT

Downstream 100 bases:

>100_bases
AACGTCTGTGTTAAAACACCAGTGGCGCCAATACGACCAGCCAAGTTAATCCACACAGTGCAAGACTCATAAACACTGCA
GCCGAGGCAATGTCCTTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPAGERMLGHAEAVLTAWERAKQ
DVSLSQLQSTQLAIGAGPNIWDAYLQGYLQGLHVGLPGVALRTEVLPANAMTRQLMDRTLDIAISFDPPKLDQFELVQLG
QINLLLVSSLKGQTGTAVLPGQYVKVDWGTAFNIVHAQEYASLPVPTLHTSSARIALDFILNNGGCAFLPEHLVQHALHS
GELHHVSGASAISRNVYVAYWAENDRLAQIKQAIDFLRDDGSVFAHATI

Sequences:

>Translated_289_residues
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPAGERMLGHAEAVLTAWERAKQ
DVSLSQLQSTQLAIGAGPNIWDAYLQGYLQGLHVGLPGVALRTEVLPANAMTRQLMDRTLDIAISFDPPKLDQFELVQLG
QINLLLVSSLKGQTGTAVLPGQYVKVDWGTAFNIVHAQEYASLPVPTLHTSSARIALDFILNNGGCAFLPEHLVQHALHS
GELHHVSGASAISRNVYVAYWAENDRLAQIKQAIDFLRDDGSVFAHATI
>Mature_289_residues
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPAGERMLGHAEAVLTAWERAKQ
DVSLSQLQSTQLAIGAGPNIWDAYLQGYLQGLHVGLPGVALRTEVLPANAMTRQLMDRTLDIAISFDPPKLDQFELVQLG
QINLLLVSSLKGQTGTAVLPGQYVKVDWGTAFNIVHAQEYASLPVPTLHTSSARIALDFILNNGGCAFLPEHLVQHALHS
GELHHVSGASAISRNVYVAYWAENDRLAQIKQAIDFLRDDGSVFAHATI

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=278, Percent_Identity=39.568345323741, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1788297, Length=205, Percent_Identity=25.8536585365854, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31757; Mature: 31757

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPA
CCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GERMLGHAEAVLTAWERAKQDVSLSQLQSTQLAIGAGPNIWDAYLQGYLQGLHVGLPGVA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCE
LRTEVLPANAMTRQLMDRTLDIAISFDPPKLDQFELVQLGQINLLLVSSLKGQTGTAVLP
EEEEECCHHHHHHHHHHHEEEEEEECCCCCCCCHHHEECCCEEEEEEECCCCCCCCEECC
GQYVKVDWGTAFNIVHAQEYASLPVPTLHTSSARIALDFILNNGGCAFLPEHLVQHALHS
CCEEEEECCCEEEEEEHHHHCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHC
GELHHVSGASAISRNVYVAYWAENDRLAQIKQAIDFLRDDGSVFAHATI
CCEEECCCCHHHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
>Mature Secondary Structure
MDTDLLKTFLEVSRTRHFGKAAENLYLTRSAVSFRVKQLESILGVALFERQRNNIQPTPA
CCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GERMLGHAEAVLTAWERAKQDVSLSQLQSTQLAIGAGPNIWDAYLQGYLQGLHVGLPGVA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCE
LRTEVLPANAMTRQLMDRTLDIAISFDPPKLDQFELVQLGQINLLLVSSLKGQTGTAVLP
EEEEECCHHHHHHHHHHHEEEEEEECCCCCCCCHHHEECCCEEEEEEECCCCCCCCEECC
GQYVKVDWGTAFNIVHAQEYASLPVPTLHTSSARIALDFILNNGGCAFLPEHLVQHALHS
CCEEEEECCCEEEEEEHHHHCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHC
GELHHVSGASAISRNVYVAYWAENDRLAQIKQAIDFLRDDGSVFAHATI
CCEEECCCCHHHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA