| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is polB [H]
Identifier: 126173864
GI number: 126173864
Start: 1902147
End: 1904576
Strand: Direct
Name: polB [H]
Synonym: Sbal_1630
Alternate gene names: 126173864
Gene position: 1902147-1904576 (Clockwise)
Preceding gene: 126173857
Following gene: 126173865
Centisome position: 37.1
GC content: 47.49
Gene sequence:
>2430_bases ATGAAGCCTAAGGCAACAACGGCCGTTAGTGTACAAGGTCGAGTCTTAACACGCCATGCGATTCATCGTCATGGGAGTTT AGTGTTGCAGTATTATCTGGCGACCGCCCAAGGCCCTGTGCTGGTGGAAGTGCAAGGCACCGAACACATTTGTTTTTGTC ATCAAACGGATGTGGCGGCTCTACAGTTACAAACGCCGGGTCAAGCATTGCGGTTTGTGCCGTTAGCGCTCAAAAGCTTT AAAGGCGGCTCCGTCAGTGGAGTTTATGCTAAATCGAGCAACAGCTTACGTACCTTACAGCGCATCGCAAAAGATGCCGA CATTCCCTTATTTGAAGCGGATATTCGGCCCGAACAGCGTTATTTAATCGAGCGGTTTGTGGCGCTGGATGTGGCATTTT TAGGGCATTTCTCTGCGCCGACTAGCGACAGTCTTGAGGCTAACTCGTTGCCGGTGTTTATCGCCGAGCGGGCTAAGAGT ATTGCCCCTTTAACGGCGGTGAATTTACGCTGTATCTCACTGGATTTTGAATGCAGCTTTGAGGGCTTACTCTATTCGGT GGCGCTATATGGTCAAGACAGTGGCCGAGACGAGGGGCAAGGCAGCCTCAAGCAGACTTATGAAAAAGTGATTATGGTGG GCGAAGTTGAATCAAACGCCCCCGATTATATCGAATGGGTGGCCGATGAAGCTGCGCTGATCCATCGATTAATCGCGTGG TTCCATGAGTTTGATCCTGACTTTATTATCGGTTGGTCAGTGGTGAGTTTCGATCTCGCGCTGTTGTCACGCCGTGCATT ATTACACCGTATTCCGCTCACTATTGGCCGCGGTGGCGCTAAGCTCGATTGGAAAGTTGACAATAAGTTTCGCCCAGAAA CCTTAGTCTTACCGGGCCGTGTGGTACTCGATGGTATCGATTGGCTTAAAGCCGCTTTTTATCACTTTGAGCGTTTCTCG TTGGAATTTGTGTCGCGGCAACTATTAGGTGAAGGCAAGGCCATTCATAACGTCGATAATCGCGTTGAAGAAATTGACCA GCTGTTTAAGACCGATAAACAAGCCTTAGCGCATTATAATCTTACCGATAGCCGCCTAGTATGGGATATTTTTACTCACA CTCAATTGTGGGATTTTGCCCTCGCGCGTGCCGAACTGACAGGTTTAGAACTGGGACGGGTAGGGGCTTCGGTGGCGGCG TTTAATCATTTGTATTTACCACATTTACATCGCGCGGGTTATGTCGCTCCAGCAGAGCCTGTGAGTCAGGGCATTGAAAG TCCTGGTGGTTACGTGATGGATTCTGTGCCGGGTCTTTATAAACACATCTTAGTGTTCGATTTTAAAAGTCTGTATCCCT CCATTATTCGCACCTTTTTGATCGACCCTAAGGGATTGATTGAAGGCTTGCAGTTGCCCGAGTCTGAATGTGTTGCGGGG TTTCTCGGTGGCCGTTTCAGTCGGCAACAGCCTATTTTACCTAAGCTAATTCAAACCTTATCTGAGCAGCGCGAAAAGGC TAAGCGTGAGCACAATGCGCCGTTATCCCAAGCGATAAAAATTATCATGAACTCGCTGTATGGGGTTTTAGGCTCTCAAG GCTGCGTGTTCCATGATGCCAAGTTGGCAAGTTCGATCACGATGCGCGGCCATCAAATCATGAAACAAACCCGCGCATGG ATAGAAGAGATGGGCTATCAAGTGATTTACGGCGATACGGATTCGACCTTTGTGTGGCTTGGCAGCGAGCCTGATCTATC AGACATTAACGCCTTAGGTAACACTCTGGCGCAGGATATCAATGCTAAGTGGCAGGCTAAGATCTGTGCTGATCACCAAG TTGAGAGTTTTCTCGAGTTACAGTTTGAGCGGCATTACGAGCAGTTCTTTATGCCAACCTTAAGAGGCTCATTAGAAGGC AGTAAAAAACGTTATGTTGGCGCGTGGCGCAATGCGAGCGATGAACTTGAGCTCACCTTTAGAGGTATGGAACAAGTGCG TAGTGATTGGAGCCCCTTAGCGCGCAAAGTCCAAGAGTCACTCTATGAGCGAATGTTTAACCAAAGGGATATCAGTATTT ATTTAGCCAGCGTGTTTGAAAAACTGCTTGATGGTCAGTTGGATAATGATTTGGTATTTCGTAAACGCATGCGGCGCAAT ATTGAAGATTACACGGCTAAATCTTCACCACATGTTAAAGTCGCCCAGCAACTATGCGGCCTAACAGGTGATGTCTCTTT TGGCAAGCGTGGGGCGCAAATTGACTACCTGATTACTGTAAATGGACCGGAACCCTTACTGTACAGAACGTCACCAATTG ATTACCAATACTACATTGATAAGCAAATTGGCCCTATTGCAGAACCGGTATTTTCGATAATGAAACTAAACTACATGGAT ATTGCGTCAAAGCAGTTGCTGTTAATTTAG
Upstream 100 bases:
>100_bases TAATGCTGTACATAATAACAGTGATTGCATAGCCTAAGAAACTTTTCTGCCATTTGGCGGCATTTAAATTGAGTAGCTAT ACGATTTGGGAACCCATGCG
Downstream 100 bases:
>100_bases TGTTTTTAATGTTCCTTATGTGTTGCGATAGGTGGCGAATGTAGCGTTTTAACCTGTTTTGTAGAGGTTAACTGGTTTGT TTTTGTGATGTTAATCGACA
Product: DNA polymerase II
Products: NA
Alternate protein names: Pol II [H]
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MKPKATTAVSVQGRVLTRHAIHRHGSLVLQYYLATAQGPVLVEVQGTEHICFCHQTDVAALQLQTPGQALRFVPLALKSF KGGSVSGVYAKSSNSLRTLQRIAKDADIPLFEADIRPEQRYLIERFVALDVAFLGHFSAPTSDSLEANSLPVFIAERAKS IAPLTAVNLRCISLDFECSFEGLLYSVALYGQDSGRDEGQGSLKQTYEKVIMVGEVESNAPDYIEWVADEAALIHRLIAW FHEFDPDFIIGWSVVSFDLALLSRRALLHRIPLTIGRGGAKLDWKVDNKFRPETLVLPGRVVLDGIDWLKAAFYHFERFS LEFVSRQLLGEGKAIHNVDNRVEEIDQLFKTDKQALAHYNLTDSRLVWDIFTHTQLWDFALARAELTGLELGRVGASVAA FNHLYLPHLHRAGYVAPAEPVSQGIESPGGYVMDSVPGLYKHILVFDFKSLYPSIIRTFLIDPKGLIEGLQLPESECVAG FLGGRFSRQQPILPKLIQTLSEQREKAKREHNAPLSQAIKIIMNSLYGVLGSQGCVFHDAKLASSITMRGHQIMKQTRAW IEEMGYQVIYGDTDSTFVWLGSEPDLSDINALGNTLAQDINAKWQAKICADHQVESFLELQFERHYEQFFMPTLRGSLEG SKKRYVGAWRNASDELELTFRGMEQVRSDWSPLARKVQESLYERMFNQRDISIYLASVFEKLLDGQLDNDLVFRKRMRRN IEDYTAKSSPHVKVAQQLCGLTGDVSFGKRGAQIDYLITVNGPEPLLYRTSPIDYQYYIDKQIGPIAEPVFSIMKLNYMD IASKQLLLI
Sequences:
>Translated_809_residues MKPKATTAVSVQGRVLTRHAIHRHGSLVLQYYLATAQGPVLVEVQGTEHICFCHQTDVAALQLQTPGQALRFVPLALKSF KGGSVSGVYAKSSNSLRTLQRIAKDADIPLFEADIRPEQRYLIERFVALDVAFLGHFSAPTSDSLEANSLPVFIAERAKS IAPLTAVNLRCISLDFECSFEGLLYSVALYGQDSGRDEGQGSLKQTYEKVIMVGEVESNAPDYIEWVADEAALIHRLIAW FHEFDPDFIIGWSVVSFDLALLSRRALLHRIPLTIGRGGAKLDWKVDNKFRPETLVLPGRVVLDGIDWLKAAFYHFERFS LEFVSRQLLGEGKAIHNVDNRVEEIDQLFKTDKQALAHYNLTDSRLVWDIFTHTQLWDFALARAELTGLELGRVGASVAA FNHLYLPHLHRAGYVAPAEPVSQGIESPGGYVMDSVPGLYKHILVFDFKSLYPSIIRTFLIDPKGLIEGLQLPESECVAG FLGGRFSRQQPILPKLIQTLSEQREKAKREHNAPLSQAIKIIMNSLYGVLGSQGCVFHDAKLASSITMRGHQIMKQTRAW IEEMGYQVIYGDTDSTFVWLGSEPDLSDINALGNTLAQDINAKWQAKICADHQVESFLELQFERHYEQFFMPTLRGSLEG SKKRYVGAWRNASDELELTFRGMEQVRSDWSPLARKVQESLYERMFNQRDISIYLASVFEKLLDGQLDNDLVFRKRMRRN IEDYTAKSSPHVKVAQQLCGLTGDVSFGKRGAQIDYLITVNGPEPLLYRTSPIDYQYYIDKQIGPIAEPVFSIMKLNYMD IASKQLLLI >Mature_809_residues MKPKATTAVSVQGRVLTRHAIHRHGSLVLQYYLATAQGPVLVEVQGTEHICFCHQTDVAALQLQTPGQALRFVPLALKSF KGGSVSGVYAKSSNSLRTLQRIAKDADIPLFEADIRPEQRYLIERFVALDVAFLGHFSAPTSDSLEANSLPVFIAERAKS IAPLTAVNLRCISLDFECSFEGLLYSVALYGQDSGRDEGQGSLKQTYEKVIMVGEVESNAPDYIEWVADEAALIHRLIAW FHEFDPDFIIGWSVVSFDLALLSRRALLHRIPLTIGRGGAKLDWKVDNKFRPETLVLPGRVVLDGIDWLKAAFYHFERFS LEFVSRQLLGEGKAIHNVDNRVEEIDQLFKTDKQALAHYNLTDSRLVWDIFTHTQLWDFALARAELTGLELGRVGASVAA FNHLYLPHLHRAGYVAPAEPVSQGIESPGGYVMDSVPGLYKHILVFDFKSLYPSIIRTFLIDPKGLIEGLQLPESECVAG FLGGRFSRQQPILPKLIQTLSEQREKAKREHNAPLSQAIKIIMNSLYGVLGSQGCVFHDAKLASSITMRGHQIMKQTRAW IEEMGYQVIYGDTDSTFVWLGSEPDLSDINALGNTLAQDINAKWQAKICADHQVESFLELQFERHYEQFFMPTLRGSLEG SKKRYVGAWRNASDELELTFRGMEQVRSDWSPLARKVQESLYERMFNQRDISIYLASVFEKLLDGQLDNDLVFRKRMRRN IEDYTAKSSPHVKVAQQLCGLTGDVSFGKRGAQIDYLITVNGPEPLLYRTSPIDYQYYIDKQIGPIAEPVFSIMKLNYMD IASKQLLLI
Specific function: Thought to be involved in DNA repair and/or mutagenesis [H]
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family [H]
Homologues:
Organism=Homo sapiens, GI156616275, Length=631, Percent_Identity=26.7828843106181, Blast_Score=137, Evalue=5e-32, Organism=Homo sapiens, GI106507301, Length=657, Percent_Identity=25.5707762557078, Blast_Score=132, Evalue=1e-30, Organism=Homo sapiens, GI153792012, Length=690, Percent_Identity=22.3188405797101, Blast_Score=82, Evalue=3e-15, Organism=Escherichia coli, GI1786246, Length=812, Percent_Identity=42.487684729064, Blast_Score=618, Evalue=1e-178, Organism=Caenorhabditis elegans, GI32565317, Length=628, Percent_Identity=25, Blast_Score=134, Evalue=2e-31, Organism=Caenorhabditis elegans, GI17559488, Length=713, Percent_Identity=23.2819074333801, Blast_Score=122, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6320101, Length=632, Percent_Identity=24.5253164556962, Blast_Score=110, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6324227, Length=540, Percent_Identity=22.5925925925926, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24648780, Length=638, Percent_Identity=22.5705329153605, Blast_Score=117, Evalue=4e-26, Organism=Drosophila melanogaster, GI24664937, Length=646, Percent_Identity=25.5417956656347, Blast_Score=114, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006172 - InterPro: IPR017964 - InterPro: IPR006133 - InterPro: IPR006134 - InterPro: IPR023211 - InterPro: IPR012337 [H]
Pfam domain/function: PF00136 DNA_pol_B; PF03104 DNA_pol_B_exo [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 91158; Mature: 91158
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS00116 DNA_POLYMERASE_B ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPKATTAVSVQGRVLTRHAIHRHGSLVLQYYLATAQGPVLVEVQGTEHICFCHQTDVAA CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCEE LQLQTPGQALRFVPLALKSFKGGSVSGVYAKSSNSLRTLQRIAKDADIPLFEADIRPEQR EEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHH YLIERFVALDVAFLGHFSAPTSDSLEANSLPVFIAERAKSIAPLTAVNLRCISLDFECSF HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCCCCEEEEEEEEEEEECCCCC EGLLYSVALYGQDSGRDEGQGSLKQTYEKVIMVGEVESNAPDYIEWVADEAALIHRLIAW CHHEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHH FHEFDPDFIIGWSVVSFDLALLSRRALLHRIPLTIGRGGAKLDWKVDNKFRPETLVLPGR HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCEEEECCH VVLDGIDWLKAAFYHFERFSLEFVSRQLLGEGKAIHNVDNRVEEIDQLFKTDKQALAHYN HEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC LTDSRLVWDIFTHTQLWDFALARAELTGLELGRVGASVAAFNHLYLPHLHRAGYVAPAEP CCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHH VSQGIESPGGYVMDSVPGLYKHILVFDFKSLYPSIIRTFLIDPKGLIEGLQLPESECVAG HHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHH FLGGRFSRQQPILPKLIQTLSEQREKAKREHNAPLSQAIKIIMNSLYGVLGSQGCVFHDA HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEHH KLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVWLGSEPDLSDINALGNTLAQDI HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHC NAKWQAKICADHQVESFLELQFERHYEQFFMPTLRGSLEGSKKRYVGAWRNASDELELTF CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCCCEEEHH RGMEQVRSDWSPLARKVQESLYERMFNQRDISIYLASVFEKLLDGQLDNDLVFRKRMRRN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC IEDYTAKSSPHVKVAQQLCGLTGDVSFGKRGAQIDYLITVNGPEPLLYRTSPIDYQYYID HHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEC KQIGPIAEPVFSIMKLNYMDIASKQLLLI CCCCHHHHHHHHHHHHHHHHHCCCCEEEC >Mature Secondary Structure MKPKATTAVSVQGRVLTRHAIHRHGSLVLQYYLATAQGPVLVEVQGTEHICFCHQTDVAA CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCEE LQLQTPGQALRFVPLALKSFKGGSVSGVYAKSSNSLRTLQRIAKDADIPLFEADIRPEQR EEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHH YLIERFVALDVAFLGHFSAPTSDSLEANSLPVFIAERAKSIAPLTAVNLRCISLDFECSF HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCCCCEEEEEEEEEEEECCCCC EGLLYSVALYGQDSGRDEGQGSLKQTYEKVIMVGEVESNAPDYIEWVADEAALIHRLIAW CHHEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHH FHEFDPDFIIGWSVVSFDLALLSRRALLHRIPLTIGRGGAKLDWKVDNKFRPETLVLPGR HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCCCEEEECCH VVLDGIDWLKAAFYHFERFSLEFVSRQLLGEGKAIHNVDNRVEEIDQLFKTDKQALAHYN HEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC LTDSRLVWDIFTHTQLWDFALARAELTGLELGRVGASVAAFNHLYLPHLHRAGYVAPAEP CCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHH VSQGIESPGGYVMDSVPGLYKHILVFDFKSLYPSIIRTFLIDPKGLIEGLQLPESECVAG HHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHH FLGGRFSRQQPILPKLIQTLSEQREKAKREHNAPLSQAIKIIMNSLYGVLGSQGCVFHDA HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEHH KLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVWLGSEPDLSDINALGNTLAQDI HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHC NAKWQAKICADHQVESFLELQFERHYEQFFMPTLRGSLEGSKKRYVGAWRNASDELELTF CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCCCCCEEEHH RGMEQVRSDWSPLARKVQESLYERMFNQRDISIYLASVFEKLLDGQLDNDLVFRKRMRRN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC IEDYTAKSSPHVKVAQQLCGLTGDVSFGKRGAQIDYLITVNGPEPLLYRTSPIDYQYYID HHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEC KQIGPIAEPVFSIMKLNYMDIASKQLLLI CCCCHHHHHHHHHHHHHHHHHCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2034216; 2261080; 1630901; 9278503; 2217198; 9079692 [H]