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The map label for this gene is ompC [C]

Identifier: 126173865

GI number: 126173865

Start: 1904800

End: 1906011

Strand: Direct

Name: ompC [C]

Synonym: Sbal_1631

Alternate gene names: 126173865

Gene position: 1904800-1906011 (Clockwise)

Preceding gene: 126173864

Following gene: 126173866

Centisome position: 37.15

GC content: 42.9

Gene sequence:

>1212_bases
ATGAACAAGACGTTAGTAGCAACTGCGCTTGCAGCAATTTTTTTAGTACCATCAGTCTCGGCTATCGAGATCTATAAAGA
TAATAAAAATGCCGTAGAAATCGGTGGTTTTATTGATGCACGCGTGATCAACACTCAAGGGGAAACTGAGGTTGTTAACG
GCGCATCTCGCATTAATTTTGGTTTTAATCGTGAGTTGACTGACGGTTGGAAAGCCTTTGCTAAATTAGAGTGGGGCGTA
AACCCAGTGGGTAGCAGCGATATCGTCTATAACAATCGCTTCGAATCTGTTCAAGAAGAGTTCTTCTATAACCGTTTAGG
TTACGCAGGTCTGTCCCATGACACTTATGGAACACTAACTATCGGTAAGCAGTGGGGTGCTTGGTACGATGTCGTTTACA
ACACTAACTACGGTTTTGTGTGGGACGGCAACACTGCAGGTGTTTACACTTATAACAAAGATGACGGCGCGGTAAACGGC
GTGGGTCGTGGTGATAAAACGGTCCAGTATCGCAACGCCTTTGGCGATGTTAGCTTCGCAGTTCAAGCGCAGTTGAAAAA
CAGCAGCTTCTATACTTGTGATACCACCGATGATATTACTCAAGCTCAGTGCCAAGCTGACTGGGAAAGTGGTGATAAAG
CGGCTCAACAAGTCGAGTACAACTACACTTATGGTGGCGCGCTGACCTATAAAGCTACTGATATGCTGACTTTAACTGCG
GGTATTAACCGTGGTGAGTTTGAAGTAAGCTTTGGTAATGGTGAGCAAAGAACTGCCATCGATGTTATCTATGGTGCCGG
AATCACTTGGGGCAACTTCGATAACGATGGTTTATATGCTGCTGCAAACTTTAACAGACAAGAAAACCATGATACTGACA
ACATTGGTCGTTTGATCAAAGATGCCTATGGTATTGAAAGTTTAGTTTCTTACAAGTTTGATAATGGCCTACGTCCATTC
ATTTCTTACAACGTGCTTGATGCGGGTAAAGATTATGTTATTCAGCCTAACTTTAATGCTGATCCTAACGATGAATTCAA
ACGTCAGTTCTTAGTTGTCGGTTTACACTTTGTATGGGACCCAAATACAGTTCTGTATATAGAAGCACGTAAAGATTACA
GTGATTTTACCAGCGCAGACAAAGACCAAGAAGCCAGAATGGCACTTTCTGAATCTGATGGCGTAGCAATCGGTATCCGT
TATACACTCTAA

Upstream 100 bases:

>100_bases
GGGATATTGAAAATTTGCTACCCTTTAAGCGGAAATTGTAAGGAAATATAACAACGGAATGACGTTGGCAGAACATAAAC
AAAAAAAGGTTAAGCACCAA

Downstream 100 bases:

>100_bases
GTTTCAAGGTTCTTTAAAGTAAGAACCTTTTCAGATATTCCCCAAAAAGCCAGTCAGCAATGACTGGCTTTTTGGTTTCC
ACTTCAGGCATGTCCTTAGC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNKTLVATALAAIFLVPSVSAIEIYKDNKNAVEIGGFIDARVINTQGETEVVNGASRINFGFNRELTDGWKAFAKLEWGV
NPVGSSDIVYNNRFESVQEEFFYNRLGYAGLSHDTYGTLTIGKQWGAWYDVVYNTNYGFVWDGNTAGVYTYNKDDGAVNG
VGRGDKTVQYRNAFGDVSFAVQAQLKNSSFYTCDTTDDITQAQCQADWESGDKAAQQVEYNYTYGGALTYKATDMLTLTA
GINRGEFEVSFGNGEQRTAIDVIYGAGITWGNFDNDGLYAAANFNRQENHDTDNIGRLIKDAYGIESLVSYKFDNGLRPF
ISYNVLDAGKDYVIQPNFNADPNDEFKRQFLVVGLHFVWDPNTVLYIEARKDYSDFTSADKDQEARMALSESDGVAIGIR
YTL

Sequences:

>Translated_403_residues
MNKTLVATALAAIFLVPSVSAIEIYKDNKNAVEIGGFIDARVINTQGETEVVNGASRINFGFNRELTDGWKAFAKLEWGV
NPVGSSDIVYNNRFESVQEEFFYNRLGYAGLSHDTYGTLTIGKQWGAWYDVVYNTNYGFVWDGNTAGVYTYNKDDGAVNG
VGRGDKTVQYRNAFGDVSFAVQAQLKNSSFYTCDTTDDITQAQCQADWESGDKAAQQVEYNYTYGGALTYKATDMLTLTA
GINRGEFEVSFGNGEQRTAIDVIYGAGITWGNFDNDGLYAAANFNRQENHDTDNIGRLIKDAYGIESLVSYKFDNGLRPF
ISYNVLDAGKDYVIQPNFNADPNDEFKRQFLVVGLHFVWDPNTVLYIEARKDYSDFTSADKDQEARMALSESDGVAIGIR
YTL
>Mature_403_residues
MNKTLVATALAAIFLVPSVSAIEIYKDNKNAVEIGGFIDARVINTQGETEVVNGASRINFGFNRELTDGWKAFAKLEWGV
NPVGSSDIVYNNRFESVQEEFFYNRLGYAGLSHDTYGTLTIGKQWGAWYDVVYNTNYGFVWDGNTAGVYTYNKDDGAVNG
VGRGDKTVQYRNAFGDVSFAVQAQLKNSSFYTCDTTDDITQAQCQADWESGDKAAQQVEYNYTYGGALTYKATDMLTLTA
GINRGEFEVSFGNGEQRTAIDVIYGAGITWGNFDNDGLYAAANFNRQENHDTDNIGRLIKDAYGIESLVSYKFDNGLRPF
ISYNVLDAGKDYVIQPNFNADPNDEFKRQFLVVGLHFVWDPNTVLYIEARKDYSDFTSADKDQEARMALSESDGVAIGIR
YTL

Specific function: Forms Passive Diffusion Pores Which Allow Small Molecular Weight Hydrophilic Materials Across The Outer Membrane. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=416, Percent_Identity=24.5192307692308, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 44847; Mature: 44847

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTLVATALAAIFLVPSVSAIEIYKDNKNAVEIGGFIDARVINTQGETEVVNGASRINF
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCEEEEEEECCCCCEEEECCCEEEEC
GFNRELTDGWKAFAKLEWGVNPVGSSDIVYNNRFESVQEEFFYNRLGYAGLSHDTYGTLT
CCCCCCCHHHHHHEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
IGKQWGAWYDVVYNTNYGFVWDGNTAGVYTYNKDDGAVNGVGRGDKTVQYRNAFGDVSFA
ECCCCCCEEEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEE
VQAQLKNSSFYTCDTTDDITQAQCQADWESGDKAAQQVEYNYTYGGALTYKATDMLTLTA
EEEEECCCEEEEECCCCCHHHHHHHCCCCCCCHHHHEEEEEEEECCEEEEEECEEEEEEE
GINRGEFEVSFGNGEQRTAIDVIYGAGITWGNFDNDGLYAAANFNRQENHDTDNIGRLIK
CCCCCEEEEEECCCCCCEEEEEEEECCEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHH
DAYGIESLVSYKFDNGLRPFISYNVLDAGKDYVIQPNFNADPNDEFKRQFLVVGLHFVWD
HHHCHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCCCCCHHHHHEEEEEEEEEEEC
PNTVLYIEARKDYSDFTSADKDQEARMALSESDGVAIGIRYTL
CCEEEEEEECCCCCHHCCCCCCCHHHEEECCCCCEEEEEEEEC
>Mature Secondary Structure
MNKTLVATALAAIFLVPSVSAIEIYKDNKNAVEIGGFIDARVINTQGETEVVNGASRINF
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCEEEEEEECCCCCEEEECCCEEEEC
GFNRELTDGWKAFAKLEWGVNPVGSSDIVYNNRFESVQEEFFYNRLGYAGLSHDTYGTLT
CCCCCCCHHHHHHEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
IGKQWGAWYDVVYNTNYGFVWDGNTAGVYTYNKDDGAVNGVGRGDKTVQYRNAFGDVSFA
ECCCCCCEEEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCEEEE
VQAQLKNSSFYTCDTTDDITQAQCQADWESGDKAAQQVEYNYTYGGALTYKATDMLTLTA
EEEEECCCEEEEECCCCCHHHHHHHCCCCCCCHHHHEEEEEEEECCEEEEEECEEEEEEE
GINRGEFEVSFGNGEQRTAIDVIYGAGITWGNFDNDGLYAAANFNRQENHDTDNIGRLIK
CCCCCEEEEEECCCCCCEEEEEEEECCEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHH
DAYGIESLVSYKFDNGLRPFISYNVLDAGKDYVIQPNFNADPNDEFKRQFLVVGLHFVWD
HHHCHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCCCCCHHHHHEEEEEEEEEEEC
PNTVLYIEARKDYSDFTSADKDQEARMALSESDGVAIGIRYTL
CCEEEEEEECCCCCHHCCCCCCCHHHEEECCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]