Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 126173760

GI number: 126173760

Start: 1772818

End: 1773939

Strand: Direct

Name: ybhS [H]

Synonym: Sbal_1524

Alternate gene names: 126173760

Gene position: 1772818-1773939 (Clockwise)

Preceding gene: 126173759

Following gene: 126173761

Centisome position: 34.58

GC content: 51.52

Gene sequence:

>1122_bases
ATGTGGCGTAGAATTTTTGCAATTGTCGTCAAAGAGCTGCGGCAATTATCACGGGATCGTATGACCTTTGGCATGATAGT
CATGATCCCGCTGGTGCAATTGATGTTGTTTGGTTATGCCATCAATACCGATGCGCGCCATCTGCCCGCGGGGCTGGTGA
ATTTGAGCGATTCCGCCTACAGCCGCTCATTGGTGCAGGCGGTAGAAGCGACGCAGGTGGTGGATTTTAAACAGCGTTAT
TTAAGTGCGGCCGAGGCAGAGGCGGCGATCACTCGCGGCGAAGTTAAAGCTGTGCTGTATTTGCCCGCCGATCTCGATGA
GCGTTTAGTGCGGCATCCAAGCTTTGCGGGTCAGCAATATTTAGCTCAGCCAGTAGGGCAATGGCTGGTGGACGGTTCTG
ATACGGTTGTCGCCTCAACCATTCGTAGCCTTAGGCAAATGCCGCTGGATGAAGTCGCAGGGAGAGCGCAAAAAACCGTG
ATGCCGAGTTTTGAAGTGGTGCAATATTTTAATCCCGAGCAACGCTCTGTGGTCAATATCGTGCCCGGCCTGTTGGGGGT
GATTTTGACTATGACCATGGTGATGTTTACCTCCGCCGCCATAGTGCGTGAGCGCGAGCAGGGTAATATGGAGTTTTTGA
TCACTACGCCAGTGCGGCCGCTGGAGTTGATGCTGGGTAAAATCGTGCCCTATGTGATCGTCGGCTTTGTGCAAGTGACC
ATTATCCTGAGCGCAGGGCATTTGTTGTTTGATGTGCCGATTCGTGGCGGAATCGACTCCATCGCCCTTGCCGCTATGTT
GTTCATTTGCGCCAGTTTAACTTTAGGATTAGTGATTTCGACCATAGCGAAAACCCAGTTGCAATCGATGCAAATGACGG
TATTTATCCTGCTGCCATCGATTCTATTGTCAGGGTTTATGTTCCCCTACGAAGCCATGCCCATCGCGGCGCAGTGGATT
GCCGAAGCCTTACCCGCAACCCACTTTATGCGCATGTCACGGGCCATAGTGCTACGCGATGCCCAAGTGATGGATCTGCA
ATTTGATGCCCTGTGGATGATAGGTTTTACCTGTGTCGGGCTATTTATCGCCAGCATGAGATTCTCTAAGCGTCTAGATT
AA

Upstream 100 bases:

>100_bases
GCCAGCCGGACGATGGAAGAAGTGCGCGCTAGCCTAGAGGATGTGTTTGTCACTTGCACCGGCGAGCGTTTGGCTGGGGT
GTCCAAGGGAGAAACTGATC

Downstream 100 bases:

>100_bases
TATTATCATCAGTATGCTGATAGTCGCATGGCAGGCTATCAGCGACAGGGAATGAGGTTGTGCTAGGTTAGGCAGTGAAT
TATGATGCCGTTTTCCAAAT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MWRRIFAIVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYSRSLVQAVEATQVVDFKQRY
LSAAEAEAAITRGEVKAVLYLPADLDERLVRHPSFAGQQYLAQPVGQWLVDGSDTVVASTIRSLRQMPLDEVAGRAQKTV
MPSFEVVQYFNPEQRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKIVPYVIVGFVQVT
IILSAGHLLFDVPIRGGIDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYEAMPIAAQWI
AEALPATHFMRMSRAIVLRDAQVMDLQFDALWMIGFTCVGLFIASMRFSKRLD

Sequences:

>Translated_373_residues
MWRRIFAIVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYSRSLVQAVEATQVVDFKQRY
LSAAEAEAAITRGEVKAVLYLPADLDERLVRHPSFAGQQYLAQPVGQWLVDGSDTVVASTIRSLRQMPLDEVAGRAQKTV
MPSFEVVQYFNPEQRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKIVPYVIVGFVQVT
IILSAGHLLFDVPIRGGIDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYEAMPIAAQWI
AEALPATHFMRMSRAIVLRDAQVMDLQFDALWMIGFTCVGLFIASMRFSKRLD
>Mature_373_residues
MWRRIFAIVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYSRSLVQAVEATQVVDFKQRY
LSAAEAEAAITRGEVKAVLYLPADLDERLVRHPSFAGQQYLAQPVGQWLVDGSDTVVASTIRSLRQMPLDEVAGRAQKTV
MPSFEVVQYFNPEQRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKIVPYVIVGFVQVT
IILSAGHLLFDVPIRGGIDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYEAMPIAAQWI
AEALPATHFMRMSRAIVLRDAQVMDLQFDALWMIGFTCVGLFIASMRFSKRLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=351, Percent_Identity=29.3447293447293, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787010, Length=360, Percent_Identity=25.8333333333333, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI48994943, Length=355, Percent_Identity=25.6338028169014, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI226510979, Length=388, Percent_Identity=27.5773195876289, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24650855, Length=392, Percent_Identity=20.6632653061225, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650853, Length=392, Percent_Identity=20.6632653061225, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41484; Mature: 41484

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRRIFAIVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH
SRSLVQAVEATQVVDFKQRYLSAAEAEAAITRGEVKAVLYLPADLDERLVRHPSFAGQQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCCCHHHH
LAQPVGQWLVDGSDTVVASTIRSLRQMPLDEVAGRAQKTVMPSFEVVQYFNPEQRSVVNI
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCCCHHHHHHCCCCHHHHHHH
VPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKIVPYVIVGFVQVT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
IILSAGHLLFDVPIRGGIDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPS
HHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLSGFMFPYEAMPIAAQWIAEALPATHFMRMSRAIVLRDAQVMDLQFDALWMIGFTCVG
HHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHH
LFIASMRFSKRLD
HHHHHHHHHHCCC
>Mature Secondary Structure
MWRRIFAIVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHH
SRSLVQAVEATQVVDFKQRYLSAAEAEAAITRGEVKAVLYLPADLDERLVRHPSFAGQQY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCCCHHHH
LAQPVGQWLVDGSDTVVASTIRSLRQMPLDEVAGRAQKTVMPSFEVVQYFNPEQRSVVNI
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHCCCCHHHHHHCCCCHHHHHHH
VPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKIVPYVIVGFVQVT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
IILSAGHLLFDVPIRGGIDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPS
HHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLSGFMFPYEAMPIAAQWIAEALPATHFMRMSRAIVLRDAQVMDLQFDALWMIGFTCVG
HHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHH
LFIASMRFSKRLD
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]