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The map label for this gene is yliF [C]

Identifier: 126173627

GI number: 126173627

Start: 1595797

End: 1597470

Strand: Direct

Name: yliF [C]

Synonym: Sbal_1389

Alternate gene names: 126173627

Gene position: 1595797-1597470 (Clockwise)

Preceding gene: 126173625

Following gene: 126173633

Centisome position: 31.12

GC content: 45.88

Gene sequence:

>1674_bases
ATGAACAAACTTAAACAAATCCTATTTTGGTGTTTTTTACTTTTTATATGGACATTAAGTCCCTCTGTATTAAGCGCTGA
AATTGCGTTGGACTCGCCGTATTTGTTCCATGCTCAAGCGGATCAACAGCCCCCAAAACAGTTTGATGCCGTGCCCCATT
GGATGGGCCAACTCGACGAAGCTAACTCTGTGAGTTTAACCGGCGGTGACTATTGGATGATCACGCCTGTGATGGTCAAT
CAACGTCAGTCGAATTGGGTAGTGGATGCGAGTAATTCGATTATCGAATCCGTAGATTATTGGATACTCGGCAGTGATGG
CAGTTCACAGCATGCCCACAGCGGCTACAGTGCCCCCTACGAATTTTTATTTGATTATGGCCGCAAGGTCACCTTGAATA
TGGGCACGGATTATTGGCTATTGGTTAAGCTCAGTAGCCGTTATTATTCATCGCCTCCCGAGATTGCCCTGCAAAGTGTG
ACGGATCATCAGTTGATGTCTGATCGCCTCGCCATGGCAGTGCTGCTGTGCTTAGGCGGCTTATTGTTTATCGCCTTATA
TAATCTTCTGATTTATATCTCTATTCTCGATAAAGCTTTTCTTTATTATGGCCTTTATGTCTTCGCGTATTTTGCTGGCT
GGGCACTGACCTTCCATTTGCCGGCGCACTTGTTTAATTTCCATTACCTTGAGTTACACCATCTATTCTTTATCAGTTTA
CCGATTTTTAATATCATGTTTTACAAGCACTTCTTGCAGCTGCCTAGTTACTCACCACGATTGTGGCGCCTCAGTCAGTA
TTTGATGTTTGCTTGTATTGTTGCTTTGCCGACCAGTATTTGGTTGTTGCCCTATACGGCTATTATTGCCTCAGTGCTGA
TCATGTTGTGGATTGCCTTAGCGATTACCTGTGGTAATGTCTGCTTGATGAAAGGCTTTGCCCCTGCACGTTATTTTATT
CTCGCCTTTACTTGTTTACTCTTGCCTGCGGTGATTATTTTGCCCGGGAATATGGGGCTAACCCCTGACTTTATTGAACA
TGCGGAGCTGGCGACGCTGATGGGCGGCACGGCCGATGCGCTGCTGTTGTCCTTAGCGTTAGCGAATAAGCTTAAGTTAC
TCGCAGAGGAACGTAAGGCGCATATTGAAGAGCTCGCGATTGCGTGGGAAAAAGCCCGCTTAGATGGCTTGACCCGAGTC
GGCAATCGTTATGCCTTTGATGAATATATGAATTCGCAATTAGGCTTCGCCGATAAAGTGGTGCAGCCTATGGCTTTAGC
GCTATTGAATATTGATAGCCTGAAAAGTGTTAACGAAACGCTCGGCCATCAAGAGGGCGATAGATTACTGCAAGTGGTAG
TGCAGTTATTGCAAGCAACGGACTTAGCGCATTTAAAGCTTTATCGTATTAGTGGTGATGAGTTTGTGGTTGTGACGCCT
TCGGTGGGGATCCCGCTATTGCTGAGTTCGTTAAATGGGTTACGCGAACAATTAGCCAGCCAAGGCTTTAAGGATTGTCA
GTGTAGTTTTGGGATCTCGTTAAACTCTGAGGTGGCCGATCCCCATGAATGGCTGCGTTTGGCAGACACTAACTTGTACC
AATCACGAATGGATAAGCGCCGCCAAGAGTATGCCGATACTCGCGGGGTCGATGTAAGACTACATTTAAGCTAA

Upstream 100 bases:

>100_bases
AAAGTTAACCTACAATTCCAACTATCGACTAAGATTGACAGCATTAGCATTTACTTCATAGCTGTATAAATGATCTATGG
CCCTTTAACTTAATAAGCCG

Downstream 100 bases:

>100_bases
CGACTGCGTTCAATCAAATGGTTTGCAATGGATGCTAGATAAAAGTTAGGTAAAACAAAACGGCGCAGATAAATTCTACG
CTGTTTTTTTTACCTTAAGC

Product: periplasmic/7TM domain sensor diguanylate cyclase

Products: NA

Alternate protein names: GGDEF Domain-Containing Protein; Periplasmic/7TM Domain Sensor Diguanylate Cyclase; 7TM Domain Sensor Diguanylate Cyclase; Response Regulator Receiver Domain-Containing Protein; Multi-Sensor Hybrid Histidine Kinase; Sensor Diguanylate Cyclase; Response Regulator; GGDEF Domain Protein; YaiC/YhcK/ArdA Family Protein; Regulator Protein; Sensor Histidine Kinase/Response Regulator

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MNKLKQILFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDEANSVSLTGGDYWMITPVMVN
QRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPYEFLFDYGRKVTLNMGTDYWLLVKLSSRYYSSPPEIALQSV
TDHQLMSDRLAMAVLLCLGGLLFIALYNLLIYISILDKAFLYYGLYVFAYFAGWALTFHLPAHLFNFHYLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLPYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
LAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADALLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRV
GNRYAFDEYMNSQLGFADKVVQPMALALLNIDSLKSVNETLGHQEGDRLLQVVVQLLQATDLAHLKLYRISGDEFVVVTP
SVGIPLLLSSLNGLREQLASQGFKDCQCSFGISLNSEVADPHEWLRLADTNLYQSRMDKRRQEYADTRGVDVRLHLS

Sequences:

>Translated_557_residues
MNKLKQILFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDEANSVSLTGGDYWMITPVMVN
QRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPYEFLFDYGRKVTLNMGTDYWLLVKLSSRYYSSPPEIALQSV
TDHQLMSDRLAMAVLLCLGGLLFIALYNLLIYISILDKAFLYYGLYVFAYFAGWALTFHLPAHLFNFHYLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLPYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
LAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADALLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRV
GNRYAFDEYMNSQLGFADKVVQPMALALLNIDSLKSVNETLGHQEGDRLLQVVVQLLQATDLAHLKLYRISGDEFVVVTP
SVGIPLLLSSLNGLREQLASQGFKDCQCSFGISLNSEVADPHEWLRLADTNLYQSRMDKRRQEYADTRGVDVRLHLS
>Mature_557_residues
MNKLKQILFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDEANSVSLTGGDYWMITPVMVN
QRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPYEFLFDYGRKVTLNMGTDYWLLVKLSSRYYSSPPEIALQSV
TDHQLMSDRLAMAVLLCLGGLLFIALYNLLIYISILDKAFLYYGLYVFAYFAGWALTFHLPAHLFNFHYLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLPYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
LAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADALLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRV
GNRYAFDEYMNSQLGFADKVVQPMALALLNIDSLKSVNETLGHQEGDRLLQVVVQLLQATDLAHLKLYRISGDEFVVVTP
SVGIPLLLSSLNGLREQLASQGFKDCQCSFGISLNSEVADPHEWLRLADTNLYQSRMDKRRQEYADTRGVDVRLHLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=30.952380952381, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=30.379746835443, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62954; Mature: 62954

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLKQILFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDE
CCHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEEECCCCCCCHHHCCCHHHHHCCCC
ANSVSLTGGDYWMITPVMVNQRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPY
CCEEEECCCCEEEEEHHEECCCCCCEEEECCHHHHHCCCEEEECCCCCCCCCCCCCCCHH
EFLFDYGRKVTLNMGTDYWLLVKLSSRYYSSPPEIALQSVTDHQLMSDRLAMAVLLCLGG
HHHHHCCCEEEEECCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFIALYNLLIYISILDKAFLYYGLYVFAYFAGWALTFHLPAHLFNFHYLELHHLFFISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHH
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLPYTAIIASVLIMLWIAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITCGNVCLMKGFAPARYFILAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADA
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHH
LLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRVGNRYAFDEYMNSQLGFADKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
VQPMALALLNIDSLKSVNETLGHQEGDRLLQVVVQLLQATDLAHLKLYRISGDEFVVVTP
HHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEC
SVGIPLLLSSLNGLREQLASQGFKDCQCSFGISLNSEVADPHEWLRLADTNLYQSRMDKR
CCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
RQEYADTRGVDVRLHLS
HHHHCCCCCCEEEEEEC
>Mature Secondary Structure
MNKLKQILFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDE
CCHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEEECCCCCCCHHHCCCHHHHHCCCC
ANSVSLTGGDYWMITPVMVNQRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPY
CCEEEECCCCEEEEEHHEECCCCCCEEEECCHHHHHCCCEEEECCCCCCCCCCCCCCCHH
EFLFDYGRKVTLNMGTDYWLLVKLSSRYYSSPPEIALQSVTDHQLMSDRLAMAVLLCLGG
HHHHHCCCEEEEECCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFIALYNLLIYISILDKAFLYYGLYVFAYFAGWALTFHLPAHLFNFHYLELHHLFFISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHH
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLPYTAIIASVLIMLWIAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITCGNVCLMKGFAPARYFILAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADA
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHH
LLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRVGNRYAFDEYMNSQLGFADKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
VQPMALALLNIDSLKSVNETLGHQEGDRLLQVVVQLLQATDLAHLKLYRISGDEFVVVTP
HHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEC
SVGIPLLLSSLNGLREQLASQGFKDCQCSFGISLNSEVADPHEWLRLADTNLYQSRMDKR
CCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
RQEYADTRGVDVRLHLS
HHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA