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The map label for this gene is ycfQ [H]

Identifier: 126173633

GI number: 126173633

Start: 1604612

End: 1605202

Strand: Direct

Name: ycfQ [H]

Synonym: Sbal_1395

Alternate gene names: 126173633

Gene position: 1604612-1605202 (Clockwise)

Preceding gene: 126173627

Following gene: 126173635

Centisome position: 31.29

GC content: 44.5

Gene sequence:

>591_bases
ATGGCACGAAGTTGTAATTTTGATCGGCAGGAAAAACTCATATTAGCGATGGAGCTTTTTTGGCAAAAGGGCTTTGCCGA
AACCTCGATTTCCGATCTCGTCGGCCATTTAGGCATTAATCGATTTAGCCTTTATAACAGTTTCGGTGACAAGCAGAATC
TTTACCGCGAGTGCCTCAGTTTCTACCTTGATAACTACTCTTTTGGTGCCTCAGATACTCTGCTGCATGAAAAAGCAGGC
TTGGCCGAAATAGCAGCTTATCTAGCCCGCTTTGTTGCCCTGCAGCGGGAACAAAAATACGGCTGTTTTATGCAAAATGC
CGTGTTAGAAAAGAGCCTCGACGATGAGAGTGTACTGCAGGAATGTCAGCGTTTATTTTGCCGATTACAGACCTCATTCA
CCCAAGTGTTACAGGATTGCCAAGCGCGAGGCGAGTTATTGGTCAATGTACAGCCGCATCAGGTCGCTGCATTTTTAGTA
CTGCAATTACAAGGAATTAGAGTGCTAGGTAAAGCGGGTGAATATGAACTGCTAGACAATGCATTCGCAGTATTGCAGGG
CTACTTAGGCAGTTTAACTACAAAAGTTTAA

Upstream 100 bases:

>100_bases
ATGATTTGCCCCTCAACTTTCTGTTGTAAAGAGGAGTGTGGTAGAGAGGAATGGTAAAGCTGATCGTGAGCGCGTATTCA
AGAGATTAGGTCGCAGGCTT

Downstream 100 bases:

>100_bases
GTGCAAATCAAGCCGTTTAACGGCACAAGTTGCTGTTTTAATGGCCTAGATTTTTGTCTAGGCCATTTTGCTTTTAGCAA
TCTATTTTTAACGGTCTATT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MARSCNFDRQEKLILAMELFWQKGFAETSISDLVGHLGINRFSLYNSFGDKQNLYRECLSFYLDNYSFGASDTLLHEKAG
LAEIAAYLARFVALQREQKYGCFMQNAVLEKSLDDESVLQECQRLFCRLQTSFTQVLQDCQARGELLVNVQPHQVAAFLV
LQLQGIRVLGKAGEYELLDNAFAVLQGYLGSLTTKV

Sequences:

>Translated_196_residues
MARSCNFDRQEKLILAMELFWQKGFAETSISDLVGHLGINRFSLYNSFGDKQNLYRECLSFYLDNYSFGASDTLLHEKAG
LAEIAAYLARFVALQREQKYGCFMQNAVLEKSLDDESVLQECQRLFCRLQTSFTQVLQDCQARGELLVNVQPHQVAAFLV
LQLQGIRVLGKAGEYELLDNAFAVLQGYLGSLTTKV
>Mature_195_residues
ARSCNFDRQEKLILAMELFWQKGFAETSISDLVGHLGINRFSLYNSFGDKQNLYRECLSFYLDNYSFGASDTLLHEKAGL
AEIAAYLARFVALQREQKYGCFMQNAVLEKSLDDESVLQECQRLFCRLQTSFTQVLQDCQARGELLVNVQPHQVAAFLVL
QLQGIRVLGKAGEYELLDNAFAVLQGYLGSLTTKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=170, Percent_Identity=30.5882352941176, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22202; Mature: 22070

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50977 HTH_TETR_2 ; PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSCNFDRQEKLILAMELFWQKGFAETSISDLVGHLGINRFSLYNSFGDKQNLYRECLS
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
FYLDNYSFGASDTLLHEKAGLAEIAAYLARFVALQREQKYGCFMQNAVLEKSLDDESVLQ
HHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ECQRLFCRLQTSFTQVLQDCQARGELLVNVQPHQVAAFLVLQLQGIRVLGKAGEYELLDN
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AFAVLQGYLGSLTTKV
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARSCNFDRQEKLILAMELFWQKGFAETSISDLVGHLGINRFSLYNSFGDKQNLYRECLS
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
FYLDNYSFGASDTLLHEKAGLAEIAAYLARFVALQREQKYGCFMQNAVLEKSLDDESVLQ
HHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
ECQRLFCRLQTSFTQVLQDCQARGELLVNVQPHQVAAFLVLQLQGIRVLGKAGEYELLDN
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AFAVLQGYLGSLTTKV
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]