Click here to switch to the map view.

The map label for this gene is algU [H]

Identifier: 126173283

GI number: 126173283

Start: 1197284

End: 1197889

Strand: Direct

Name: algU [H]

Synonym: Sbal_1039

Alternate gene names: 126173283

Gene position: 1197284-1197889 (Clockwise)

Preceding gene: 126173282

Following gene: 126173284

Centisome position: 23.35

GC content: 47.19

Gene sequence:

>606_bases
GTGGCATTAGCAATACCGCAATTACCAACCCATGAGCACTCAGATGAGCAATTGATGTTGTGCTATGCCAAGGGCGATTC
AAAAGCATTTGAGCAGTTATACCTGAAGCACAAAGGCGCACTTTATCGTTACTTTGTGCGCCAGTTAGGTGATAAGCAGT
TAGCTGAGGATTTATATCAAGAAACTTGGGGACGGGTGATCCGCGCAGCGGCTAACTACGAAGCCAGTGCTAAGTTTACT
ACTTGGTTATATCGTATCGCCCATAACTTATTGATTGATCATGTGCGAGCGGTTAAGCCCGTCGATTTAGTCGCCACTGA
TGAGGACGAAACTGGGGCCGATACTTTTGTGGCGGGTGAGCAAGATAAGCCCGACGTGCAGTGGCAAGAAGCGCAAAAGA
GTTTATTGCTAAAAACCTGTATCGCACTGTTACCCCAAGTCCAGAAAGAGGCATTTATCCTGAACATTGAAATGGGTTTT
ACGGCTGCCATCATTAGCGACATTGCGGGCGTGACTTTAGAAGCGACTAAGAGCCGTATTCGCTACGCTTACCAAAGTCT
AAAGGATTGTGTCAGCGCGAAATGGCAGGAGGCGAGTCATGAGTAA

Upstream 100 bases:

>100_bases
CCATGGCGAGCCAATGAGAGATAAGAGCAATCCGCGTAATGAGAGATTACAATAGTAAAAGTGAATACAGGGGGTTAACC
CAAATGACGAGGAATTTCCC

Downstream 100 bases:

>100_bases
TTCATCTTCAAATGCCGATGAGATTGCGCTGCAACAACAGGTATTAGCTTGGTATCGCCAACAGGCTTTAGAGGTTCCAC
CACAGCAACTCGATCAAGAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEASAKFT
TWLYRIAHNLLIDHVRAVKPVDLVATDEDETGADTFVAGEQDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGF
TAAIISDIAGVTLEATKSRIRYAYQSLKDCVSAKWQEASHE

Sequences:

>Translated_201_residues
MALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEASAKFT
TWLYRIAHNLLIDHVRAVKPVDLVATDEDETGADTFVAGEQDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGF
TAAIISDIAGVTLEATKSRIRYAYQSLKDCVSAKWQEASHE
>Mature_200_residues
ALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEASAKFTT
WLYRIAHNLLIDHVRAVKPVDLVATDEDETGADTFVAGEQDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGFT
AAIISDIAGVTLEATKSRIRYAYQSLKDCVSAKWQEASHE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22764; Mature: 22633

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQ
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
ETWGRVIRAAANYEASAKFTTWLYRIAHNLLIDHVRAVKPVDLVATDEDETGADTFVAGE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECC
QDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAIISDIAGVTLEATKSRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHH
RYAYQSLKDCVSAKWQEASHE
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQ
CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
ETWGRVIRAAANYEASAKFTTWLYRIAHNLLIDHVRAVKPVDLVATDEDETGADTFVAGE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECC
QDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAIISDIAGVTLEATKSRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHH
RYAYQSLKDCVSAKWQEASHE
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]