Click here to switch to the map view.

The map label for this gene is yqaA [H]

Identifier: 126173273

GI number: 126173273

Start: 1183301

End: 1183726

Strand: Direct

Name: yqaA [H]

Synonym: Sbal_1029

Alternate gene names: 126173273

Gene position: 1183301-1183726 (Clockwise)

Preceding gene: 126173270

Following gene: 126173274

Centisome position: 23.08

GC content: 50.47

Gene sequence:

>426_bases
ATGACTGAGTTAGGCATTATGTTCTCCGGTGCTTTTTTAGCGGCGACTTTGTTACCGGGGGGATCTGAAGTCTTACTCGT
GGCGCTATTAAACAAAACCCCAGAGGCTTGGGTTGCGCTGGTCGCGGTGGCCAGTATTGGCAACACGTTGGGCGCGATGA
CCAGTTTCTATTTAGGCCGCTTAGGTCGCCTCGCAAAATCACCAGAAGCCTTAGCGACTGGTAAACATGCAAAGGGGCTC
GCCATGATTGAACGCTATGGCGTGTGGGCGCTGTTACTCTCATGGGCACCGGTTATCGGCGATATTCTCTGTTTATTGGC
GGGCTGGGTGAGGTTGCCGCTAATTTCCTCTTTACTGATGATTTTAATTGGTAAAACAATTCGTTACTTAATTGTTGCCG
CTGCCGTGCTGCAATGGATGGCATGA

Upstream 100 bases:

>100_bases
GAGTTTGTTGTAAAAAGATTAAGTGAAACATTCAATTAACCCATGACAAACCCTATCGCATTGAATACAAAAAGAGAGAT
TTATCATTGAGTAAGCCATT

Downstream 100 bases:

>100_bases
TGGCGTTAGGATGCATTTAATGGTCAAGGGCGGGGAGTGTTTTTCCGTTTAGACTGAATTTACTGTATAGATAGGAACTT
AGTGTCAATTTTGCGAGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTELGIMFSGAFLAATLLPGGSEVLLVALLNKTPEAWVALVAVASIGNTLGAMTSFYLGRLGRLAKSPEALATGKHAKGL
AMIERYGVWALLLSWAPVIGDILCLLAGWVRLPLISSLLMILIGKTIRYLIVAAAVLQWMA

Sequences:

>Translated_141_residues
MTELGIMFSGAFLAATLLPGGSEVLLVALLNKTPEAWVALVAVASIGNTLGAMTSFYLGRLGRLAKSPEALATGKHAKGL
AMIERYGVWALLLSWAPVIGDILCLLAGWVRLPLISSLLMILIGKTIRYLIVAAAVLQWMA
>Mature_140_residues
TELGIMFSGAFLAATLLPGGSEVLLVALLNKTPEAWVALVAVASIGNTLGAMTSFYLGRLGRLAKSPEALATGKHAKGLA
MIERYGVWALLLSWAPVIGDILCLLAGWVRLPLISSLLMILIGKTIRYLIVAAAVLQWMA

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=133, Percent_Identity=46.6165413533835, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 14919; Mature: 14788

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELGIMFSGAFLAATLLPGGSEVLLVALLNKTPEAWVALVAVASIGNTLGAMTSFYLGR
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRLAKSPEALATGKHAKGLAMIERYGVWALLLSWAPVIGDILCLLAGWVRLPLISSLLM
HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIGKTIRYLIVAAAVLQWMA
HHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TELGIMFSGAFLAATLLPGGSEVLLVALLNKTPEAWVALVAVASIGNTLGAMTSFYLGR
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRLAKSPEALATGKHAKGLAMIERYGVWALLLSWAPVIGDILCLLAGWVRLPLISSLLM
HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIGKTIRYLIVAAAVLQWMA
HHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]