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The map label for this gene is xerD [H]

Identifier: 126173088

GI number: 126173088

Start: 953045

End: 953974

Strand: Direct

Name: xerD [H]

Synonym: Sbal_0843

Alternate gene names: 126173088

Gene position: 953045-953974 (Clockwise)

Preceding gene: 126173087

Following gene: 126173089

Centisome position: 18.59

GC content: 51.18

Gene sequence:

>930_bases
ATGACGCCGTTTTTTTATGGAGTTTTTGTGCCTAAAACATACCAGCCCGATCCGCTTATTGATGTTTTTCTTGATGATCT
TTGGTCGAGCAAGGGACTGAGTGACAACACCTTATCGGCCTATCGCACCGATTTGCGCCATTTTGATCGTTATCAAGGTC
AGCAAGGGGTAACGCTGCTCGCGGTTTCTCAGGCCGATGTCAGAGCGTATTTAGCCTTTAGAGTTGAGCAGGATTTTGCG
CGCACCAGTAGCGCTCGGCTGCTCAGTAGTTTACGGCGTTTCTATACCTATTTAGTGCAGACCAAGCAGATTTTAGCCGA
TCCTATGGCCCTAGTTGAGTCGCCTAAATTAACCCGCCATTTACCCGATTCATTGAGTGAATCACAGGTCGATCGCTTGT
TGTCTGAGCCCAATGTGGAAGATGCCGTCGAATGTCGCGACAAAGCCATGCTAGAGCTGTTGTATGCCACAGGCTTGAGG
GTGAGCGAGCTCGTTGGCTTGACGATGGAGCAGATGAGCCTGCGCCAAGGCTTAGTGCGCATTGTGGGTAAGGGCGGCAA
AGAGCGTCTCGTGCCGCTGGGTGAATTAGCGATTACCGAAGTCGAGAGCTACATGAAGTTTGCTCGCCAAGAGTTGCTTG
GCAATAAACAATCCGATGTGGTGTTTCCGTCAAAACGCGGGCAGATGATGACGCGGCAAACCTTTTGGCATCGGATTAAG
CTGTATGCCCTGCGTGCTGGGATTGAAACCGCATTATCACCGCACACATTGCGCCATGCTTTTGCTACCCATTTGCTCAA
TCACGGTGCCGATCTGCGGGTGGTGCAATTGCTGTTAGGCCATAGCGACCTGTCGACCACGCAGATTTATACCCATGTGG
CGCGGGCAAGGTTGCAGGAATTGCATCAACAGCATCATCCAAGAGGCTGA

Upstream 100 bases:

>100_bases
GGCTGCTGCTTAAGCCTTGTACTCGCGTTTTTACGCGGGACTCAGTTAAGCTGATGTAGGCTTAAATGTAGTTAAGTTAA
TATCAACGGCGTATCATTTG

Downstream 100 bases:

>100_bases
AAAAGGATTTAGTTACAGCATAAATTTGCTTTCCGCGCGGCTTGTCTGTAACTTTTTGCCACCATACGGGGTCTATTAAG
TATATCGCGTTTGAACGACC

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTPFFYGVFVPKTYQPDPLIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFA
RTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLR
VSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG

Sequences:

>Translated_309_residues
MTPFFYGVFVPKTYQPDPLIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFA
RTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLR
VSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG
>Mature_308_residues
TPFFYGVFVPKTYQPDPLIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFAR
TSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLRV
SELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKL
YALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=61.5120274914089, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1790244, Length=280, Percent_Identity=37.5, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1790768, Length=166, Percent_Identity=32.5301204819277, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790767, Length=168, Percent_Identity=27.9761904761905, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35177; Mature: 35046

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFFYGVFVPKTYQPDPLIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLL
CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
AVSQADVRAYLAFRVEQDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRH
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVR
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
HHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHH
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQE
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LHQQHHPRG
HHHHHCCCC
>Mature Secondary Structure 
TPFFYGVFVPKTYQPDPLIDVFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQGQQGVTLL
CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
AVSQADVRAYLAFRVEQDFARTSSARLLSSLRRFYTYLVQTKQILADPMALVESPKLTRH
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVR
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
HHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHH
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQE
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LHQQHHPRG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]