| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is ycaO [H]
Identifier: 126172892
GI number: 126172892
Start: 728312
End: 730501
Strand: Direct
Name: ycaO [H]
Synonym: Sbal_0643
Alternate gene names: 126172892
Gene position: 728312-730501 (Clockwise)
Preceding gene: 126172891
Following gene: 126172893
Centisome position: 14.2
GC content: 44.89
Gene sequence:
>2190_bases ATGGAAATCAAAGTTAATTTTCTCGACAATCTTAGACTTGAAGCCAAGTTTGATGATTTTACCGTTACCGCCGATCAGCC GATCCGCTACAAAGGTGATGGTTCTGCCCCTAGTCCGTTTGATTATTTCTTAGCGTCGTCAGCCCTGTGTGCGGCCTATT TCGTTAAGGTGTATTGCAAAGCCCGCGATATTCCAACGGATAACATCAGACTGTCGCAGAACAATATTGTCGATCCTGAA GATCGCTACAACCAGATTTTCCAAATTCAGGTTGAATTGCCAGAAGATATTTCCGATAAAGATCGCGAAGGTATTTTGCG TTCAATTGACCGTTGTACCGTTAAAAAAGTGGTGCAAACGGGACCAGAATTTAAGATTGAAACCGTTGAAAACCTAGACG CAGACGCCAATGCCATGCTGATGGGCCAGCCTAATGGCGCATCGAGCACCTTTATTCTGGGTAAAGATCTGCCACTGGAG CAGACCATTGCCAATATGACGGGCATGCTCGCCGATCTTGGAATGAAGATAGAGATCTCATCATGGCGTAACATAGTGCC GAACGTGTGGTCACTGCATATTCGTGACGCCGCTTCGCCAATGTGTTTTACCAATGGTAAAGGCGCGACCAAAGAAAGCG CGCTGTGTTCAGCGCTCGGCGAGTTTATTGAGCGTTTGAATAACAACTTTTTCTATAATGATCAATTCTTTGGTACTGAA ATCGCTAATAGCGAATTTGTGCATTATCCCAATGAAAAGTGGTTTGCGTTAGAGGAAGACGATGCGTTGCCTGCGGGTAT TCTGGATGACTATTGTTTAGAGATTTATAACCCAGACGACGAGCTGTGCGGTTCGCACTTGATTGATACTAACTCGGGCA ATATTAAGCGCGGCATTTGTGCGATCCCTTACACCCGTAAATCTGACGGTGAAACGGTTTACTTCCCATCGAACCTGATT GAAAACCTATTTTTAAGTAACGGCATGAGCGCGGGCAATAACCTGCAAGAAGCGCATGTGCAGTGTTTGTCAGAGATTTT TGAGCGTGCCGTTAAACGCCAAATCATTGAGCAAGAAATTGTTCTACCAGATGTACCAATGCAGGTACTTGAAAAATATC CAAGTATTCTCGCGGGCATTAACGGCTTAGAAGAGCAAGGTTTCCCAGTTGTAGTCAAAGACGCTTCACTCGGCGGTCAA TTCCCCGTGATGTGCGTGACCCTAATGAACCCGAAAACTGGCGGCGTGTTTGCCTCATTTGGCGCGCACCCAAGCTTTGA AGTGGCATTAGAACGTAGCTTAACTGAGCTGTTGCAAGGCCGCAGTTTCGAAGGCTTAAACGACGTGCCAAAACCGACCT TTAATAGCATGGCGGTCAGCGAGCCAGAAAACTTTGTTGAGCACTTTATTGATTCAACAGGGGTGATTTCATGGCGCTTC TTTAGCAGTAAATTCGATTATGAATTCTGTGAATGGGATTTCTCTGGTAGCAGCGAAGAAGAGGCCAGCGGTCTGTTTGG TATCTTAGAAGCGTTAGGTAAAGAGGTGTATATCGCTGAGTTTACTGATTTAGGTGCGTCGGCATGCCGTATTTTAGTAC CTGATTATTCTGAAATTTATCCAGTTGATGACTTGATTTGGGATAATACCAACAAGGCGCTGGCGTACCGTGAAGATATC CTAAATCTGCATTCGTTAAGCACTAAACAGCTGGTCAATTTGGTTAATCGTTTAGAAGAAAGCCAACTCGATAACTACAC GGATATCCGCACCTTAATCGGCATTGTATTCGATGAAAATACCGTTTGGGGTCAGCTCACCATTATCGAGCTTAAGATCC TGATTTATTTGGCACTCGGTGCACATGAAGACGCGATTGAGTTGGTCGGTGAGTTCCTGCAGTTTAACGACAATACCGTT AAACGCGGCCTGTTCTACCAAGCCATGAATGCTGTATTGGAAGTGACTTTAGATGACGAGTTAGAGCTTGATGATTTTAT CCATAATTTCAACCGCATGTTCGGTAAAGATGTGATGGACAACGTTGTTGGCTCGGTCAAAGGTAAAGTGCGTTTTTATG GCCTGACTAAGACCAGCATGCAGCTCGAAGGCATTGAGCCGCATTTAAGATTGATAGAAAGCTATAAAAAGCTGCATCAA GCCCGTAAAGCTGCGAAAGACGCGAATTAA
Upstream 100 bases:
>100_bases CTAAAAACACCGATAATTCCCCCTTAATGACTCATTACCAATGACGCGACTTGGTCGATGGGCTGCTACAGACTCGCATA TTTAGTGGAAATCATATTCA
Downstream 100 bases:
>100_bases TTCTGTTATTTGGCATTAGCTTAATGTGTTTAAAAGCGAACCTTAGGGTTCGCTTTTTTGTTTGCTTCGAGCCCTTAAGT ATGATGCTACAAACATAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCKARDIPTDNIRLSQNNIVDPE DRYNQIFQIQVELPEDISDKDREGILRSIDRCTVKKVVQTGPEFKIETVENLDADANAMLMGQPNGASSTFILGKDLPLE QTIANMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGTE IANSEFVHYPNEKWFALEEDDALPAGILDDYCLEIYNPDDELCGSHLIDTNSGNIKRGICAIPYTRKSDGETVYFPSNLI ENLFLSNGMSAGNNLQEAHVQCLSEIFERAVKRQIIEQEIVLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQ FPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF FSSKFDYEFCEWDFSGSSEEEASGLFGILEALGKEVYIAEFTDLGASACRILVPDYSEIYPVDDLIWDNTNKALAYREDI LNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDENTVWGQLTIIELKILIYLALGAHEDAIELVGEFLQFNDNTV KRGLFYQAMNAVLEVTLDDELELDDFIHNFNRMFGKDVMDNVVGSVKGKVRFYGLTKTSMQLEGIEPHLRLIESYKKLHQ ARKAAKDAN
Sequences:
>Translated_729_residues MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCKARDIPTDNIRLSQNNIVDPE DRYNQIFQIQVELPEDISDKDREGILRSIDRCTVKKVVQTGPEFKIETVENLDADANAMLMGQPNGASSTFILGKDLPLE QTIANMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGTE IANSEFVHYPNEKWFALEEDDALPAGILDDYCLEIYNPDDELCGSHLIDTNSGNIKRGICAIPYTRKSDGETVYFPSNLI ENLFLSNGMSAGNNLQEAHVQCLSEIFERAVKRQIIEQEIVLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQ FPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF FSSKFDYEFCEWDFSGSSEEEASGLFGILEALGKEVYIAEFTDLGASACRILVPDYSEIYPVDDLIWDNTNKALAYREDI LNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDENTVWGQLTIIELKILIYLALGAHEDAIELVGEFLQFNDNTV KRGLFYQAMNAVLEVTLDDELELDDFIHNFNRMFGKDVMDNVVGSVKGKVRFYGLTKTSMQLEGIEPHLRLIESYKKLHQ ARKAAKDAN >Mature_729_residues MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCKARDIPTDNIRLSQNNIVDPE DRYNQIFQIQVELPEDISDKDREGILRSIDRCTVKKVVQTGPEFKIETVENLDADANAMLMGQPNGASSTFILGKDLPLE QTIANMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGTE IANSEFVHYPNEKWFALEEDDALPAGILDDYCLEIYNPDDELCGSHLIDTNSGNIKRGICAIPYTRKSDGETVYFPSNLI ENLFLSNGMSAGNNLQEAHVQCLSEIFERAVKRQIIEQEIVLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQ FPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF FSSKFDYEFCEWDFSGSSEEEASGLFGILEALGKEVYIAEFTDLGASACRILVPDYSEIYPVDDLIWDNTNKALAYREDI LNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDENTVWGQLTIIELKILIYLALGAHEDAIELVGEFLQFNDNTV KRGLFYQAMNAVLEVTLDDELELDDFIHNFNRMFGKDVMDNVVGSVKGKVRFYGLTKTSMQLEGIEPHLRLIESYKKLHQ ARKAAKDAN
Specific function: Unknown
COG id: COG1944
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0142 family [H]
Homologues:
Organism=Escherichia coli, GI87081799, Length=581, Percent_Identity=46.815834767642, Blast_Score=543, Evalue=1e-155,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003776 [H]
Pfam domain/function: PF02624 YcaO [H]
EC number: NA
Molecular weight: Translated: 81863; Mature: 81863
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCK CEEEEEEHHCCEEEEECCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARDIPTDNIRLSQNNIVDPEDRYNQIFQIQVELPEDISDKDREGILRSIDRCTVKKVVQT HCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC GPEFKIETVENLDADANAMLMGQPNGASSTFILGKDLPLEQTIANMTGMLADLGMKIEIS CCCEEEEEHHCCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGTE CHHCCCCCHHEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCC IANSEFVHYPNEKWFALEEDDALPAGILDDYCLEIYNPDDELCGSHLIDTNSGNIKRGIC CCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHEEECCCHHHCCCCEEECCCCCCCCCEE AIPYTRKSDGETVYFPSNLIENLFLSNGMSAGNNLQEAHVQCLSEIFERAVKRQIIEQEI ECCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC VLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQFPVMCVTLMNPKTGGVFASF CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEC GAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE FSSKFDYEFCEWDFSGSSEEEASGLFGILEALGKEVYIAEFTDLGASACRILVPDYSEIY ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCCCEEEECCCCHHHC PVDDLIWDNTNKALAYREDILNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDEN CCHHHEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCC TVWGQLTIIELKILIYLALGAHEDAIELVGEFLQFNDNTVKRGLFYQAMNAVLEVTLDDE CCEEEEEHHHHEEHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCC LELDDFIHNFNRMFGKDVMDNVVGSVKGKVRFYGLTKTSMQLEGIEPHLRLIESYKKLHQ CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHH ARKAAKDAN HHHHHCCCC >Mature Secondary Structure MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCK CEEEEEEHHCCEEEEECCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARDIPTDNIRLSQNNIVDPEDRYNQIFQIQVELPEDISDKDREGILRSIDRCTVKKVVQT HCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC GPEFKIETVENLDADANAMLMGQPNGASSTFILGKDLPLEQTIANMTGMLADLGMKIEIS CCCEEEEEHHCCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGTE CHHCCCCCHHEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCC IANSEFVHYPNEKWFALEEDDALPAGILDDYCLEIYNPDDELCGSHLIDTNSGNIKRGIC CCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHEEECCCHHHCCCCEEECCCCCCCCCEE AIPYTRKSDGETVYFPSNLIENLFLSNGMSAGNNLQEAHVQCLSEIFERAVKRQIIEQEI ECCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC VLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQFPVMCVTLMNPKTGGVFASF CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEC GAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEE FSSKFDYEFCEWDFSGSSEEEASGLFGILEALGKEVYIAEFTDLGASACRILVPDYSEIY ECCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEHHHCCCCCEEEECCCCHHHC PVDDLIWDNTNKALAYREDILNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDEN CCHHHEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCC TVWGQLTIIELKILIYLALGAHEDAIELVGEFLQFNDNTVKRGLFYQAMNAVLEVTLDDE CCEEEEEHHHHEEHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCC LELDDFIHNFNRMFGKDVMDNVVGSVKGKVRFYGLTKTSMQLEGIEPHLRLIESYKKLHQ CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHH ARKAAKDAN HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]