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The map label for this gene is ps601 [H]

Identifier: 125625278

GI number: 125625278

Start: 2481927

End: 2483105

Strand: Reverse

Name: ps601 [H]

Synonym: llmg_2525

Alternate gene names: 125625278

Gene position: 2483105-2481927 (Counterclockwise)

Preceding gene: 125625279

Following gene: 125625277

Centisome position: 98.17

GC content: 36.47

Gene sequence:

>1179_bases
ATGAATATTAAAGAATATACAAAAAAAGACGGCACAAAGGTGTACCGCGCTAATGTTTATATAGGTGTGGACGTCCTGAC
TGGTAAGCAAGTGCGGACAAGCGTAACCGCAAAAAGTAAAAAGATGTGTGAAACTAAAGCACATCAAGTTATAAATGATT
TTATCAATAACGGTCAAACAATTGCAAGAAAAAAAGTTTCTTTTGATAGCTTTGAATCTTTGACTTTGAGCTGGTTTGAA
AGTTATAAGCTGACAGTTAAAGCTAACAGCATAAGGATAGTAAACAATAACTTGAAAGTTTATATATTGCCCGAACTTGG
CGCGTATAGAGTTGATAGAATTAATCCCGTGTTATTACAAACAATCGTTAATAAATGGGCAAAGAATGCGAACACGGCCA
AAATAGTAAACGGCAAGCGCGAACGCGGTAAGTGTAAGGACTATAAAGTTATGCTTAATATCATCAAGCGTATTCTTGAC
TATGGTATACAGTTAGGGGCTATTGAAGAGAATCCAGCTACTAAAGTTTTTCCGCCAAAACTCAAAATTAGAGAAGTTTC
AAAAATAAAATACTTTGATAATGAAGAACTTAAACAATTTCTAACATACTTAGACACTTTGGAAACAACGCCAACAAATA
AAAGGCGTATAACTTTATACCGCTTTTTACTTGCTACTGGTTTACGTATCGGGGAGGCTTTGGCGCTGTCATGGTCTGAT
ATTGATTTTTTTGATAAGTCTGTATCTGTGAGCAAAACAATGATACAAGCGCGGGGAGTGCAAAACATGCCCAAAACGAA
AGAGAGTAATAGGGCGATCGCTTTGGACAATGACACTATTAAAATGCTGAAAGAGTGGAAGAAGTGCCAAAATAATAATA
CTGTTAGGCTTATAGATTCGCCGATATTCTCTTATAATGGAAAGACATACACTTATATAAATGAAGTAACTCAACTAAAA
AAACATTTTGCGCGTGCCAACGTTCCTAACATTGGCTTTCACGGTTTCCGTCATACTCATGCCAGCCTTTTAATGAACAA
TGATGTAAATCCCAAAGAGATACAAAGACGGCTAGGACATGCCGACTATGCTATCACAATGAACACATACAGCCACTTAT
CCAAAAGTAAAGAAAAAGAGACCGCTGAAAAGTTCGGCGACATCTTAAAAGCATTATGA

Upstream 100 bases:

>100_bases
AACCAGTTAACTAATTAATCGTATAAGCTCTAATAAAAATATTTCTCAATCCTCGTACATGCCTTGCCTGACATTAGTAC
AAAAAGGAAAGGAAAAAATT

Downstream 100 bases:

>100_bases
TTTTTTGGTCGAACGTATTAAAAAGCGTAAAAAAATAGCGTTGTTTTCTGTGGAGTGCTTATATATCAAGGGTCTAAGCT
CTTTATATATTCATTGCTCA

Product: putative integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MNIKEYTKKDGTKVYRANVYIGVDVLTGKQVRTSVTAKSKKMCETKAHQVINDFINNGQTIARKKVSFDSFESLTLSWFE
SYKLTVKANSIRIVNNNLKVYILPELGAYRVDRINPVLLQTIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILD
YGIQLGAIEENPATKVFPPKLKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSWSD
IDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDSPIFSYNGKTYTYINEVTQLK
KHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLSKSKEKETAEKFGDILKAL

Sequences:

>Translated_392_residues
MNIKEYTKKDGTKVYRANVYIGVDVLTGKQVRTSVTAKSKKMCETKAHQVINDFINNGQTIARKKVSFDSFESLTLSWFE
SYKLTVKANSIRIVNNNLKVYILPELGAYRVDRINPVLLQTIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILD
YGIQLGAIEENPATKVFPPKLKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSWSD
IDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDSPIFSYNGKTYTYINEVTQLK
KHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLSKSKEKETAEKFGDILKAL
>Mature_392_residues
MNIKEYTKKDGTKVYRANVYIGVDVLTGKQVRTSVTAKSKKMCETKAHQVINDFINNGQTIARKKVSFDSFESLTLSWFE
SYKLTVKANSIRIVNNNLKVYILPELGAYRVDRINPVLLQTIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILD
YGIQLGAIEENPATKVFPPKLKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSWSD
IDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDSPIFSYNGKTYTYINEVTQLK
KHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRLGHADYAITMNTYSHLSKSKEKETAEKFGDILKAL

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45021; Mature: 45021

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKEYTKKDGTKVYRANVYIGVDVLTGKQVRTSVTAKSKKMCETKAHQVINDFINNGQT
CCCHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IARKKVSFDSFESLTLSWFESYKLTVKANSIRIVNNNLKVYILPELGAYRVDRINPVLLQ
HHHHHCCCCHHHHHHHHHHHCEEEEEEECEEEEEECCEEEEEECCCCCEECCCCCHHHHH
TIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILDYGIQLGAIEENPATKVFPPK
HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
LKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSWSD
CCHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHCCEEEEECCC
IDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDS
CHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEC
PIFSYNGKTYTYINEVTQLKKHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRLGH
CEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHCCC
ADYAITMNTYSHLSKSKEKETAEKFGDILKAL
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIKEYTKKDGTKVYRANVYIGVDVLTGKQVRTSVTAKSKKMCETKAHQVINDFINNGQT
CCCHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IARKKVSFDSFESLTLSWFESYKLTVKANSIRIVNNNLKVYILPELGAYRVDRINPVLLQ
HHHHHCCCCHHHHHHHHHHHCEEEEEEECEEEEEECCEEEEEECCCCCEECCCCCHHHHH
TIVNKWAKNANTAKIVNGKRERGKCKDYKVMLNIIKRILDYGIQLGAIEENPATKVFPPK
HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
LKIREVSKIKYFDNEELKQFLTYLDTLETTPTNKRRITLYRFLLATGLRIGEALALSWSD
CCHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHCCEEEEECCC
IDFFDKSVSVSKTMIQARGVQNMPKTKESNRAIALDNDTIKMLKEWKKCQNNNTVRLIDS
CHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEC
PIFSYNGKTYTYINEVTQLKKHFARANVPNIGFHGFRHTHASLLMNNDVNPKEIQRRLGH
CEEECCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCHHHHHHHCCC
ADYAITMNTYSHLSKSKEKETAEKFGDILKAL
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]