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The map label for this gene is arcD1 [H]

Identifier: 125625073

GI number: 125625073

Start: 2260459

End: 2262039

Strand: Reverse

Name: arcD1 [H]

Synonym: llmg_2311

Alternate gene names: 125625073

Gene position: 2262039-2260459 (Counterclockwise)

Preceding gene: 125625074

Following gene: 125625072

Centisome position: 89.43

GC content: 38.2

Gene sequence:

>1581_bases
ATGGACGCAGAAAATAAAAAAGGAATTGGCCTTGCTGCTTTAGTTGCGATTATTGTTTCTGGAGCGATTGGTGGTGGGGT
ATTTAACCTCTCTAACGATTTAGCAACAAATGCATCACCTGGTGGTGTTGTCATTTCATGGATCGTTATTGGTTTTGGTA
TATTAATGTTGGTTTTATCACTGAATCATTTGGTGGTAAACAAACCTGAACTTTCAGGTGTGTCAGATTATGCACGTGCT
GGTTTTGGTAATATGGTTGGTTTTATCTCAGGATGGGGTTATTGGTTATCTGCTTGGGCAGGTAATATTGCCTTTGCTGT
TTTGATGATGACTTCCGTTGACTATTTCTTCCCCGGCGTTTTTCAAGCTAAGAATGGCTCATTGACCATTCTGTCAGTAA
TTGTTGTTTCAATTGTTTCGTGGGGATTGACTTTACTTGTTATGCGAGGTGTTGAAGGGGCTGCTGCCATTAATGCAATT
GTCCTTGTTGCAAAATTGATTCCCTTGTTTGTCTTTGTTATTGCTGGAATAGTTACTTTCAAAGCTGGAGTCTTTAGTGC
TCACTTTTGGCAAAATTTCGTTGCGAATACAAATGCTGATGGCGTAATTAAGAGCTTAACTTGGTCTAATATGACTGGCG
GAGATTTATTCAGTCAAGTCAAAGGTTCACTCATGGTTATGATTTGGGTCTTCGTCGGAATCGAAGGGGCTGCTATGATG
GGTGACCGTGCCAAACGTAAATCGGATGCTGGTAAAGCTTCAATTTTCGGTTTGATTGCCTTGTTAGTGATTTATATCTT
GCTCTCATTGTTACCATTTGGTTTTATGAGCCAACAAGAACTAGCCAATACAGGTCAACCTGGTTTGGTTCATATTTTGA
ACGCTATGGTTGGCGGTTGGGGTGGTTCACTGATGGCCATTGGTCTTGTGATTTCACTTCTTGGAGCTTGGTTGTCATGG
ACAATGCTTCCTGTTGAAGCAACACAACAATTATCAGAACAAAAATTACTTCCTAGTTGGTTTGGTAAACTTAATGACAA
AGGTGCACCTAAAAATTCACTTTTGCTGACACAATTGATTGTTCAAATTTTCTTGATTGTCACTTATTTTGTAGCTGATG
CTTACAATGTCTTTGTTTACCTTTGTACCGCTGTTATCATGATTTGTTATGCCTTAGTTGGTTTATATCTCTTTAAATTA
GGGATTCAAGAGAAGAAAACAAGTAATATCATTATTGGTTTCATCGCGGCTGCCTTCCAAATCTTAGCCTTGTACTATTC
AGGATGGCAATTTGTTTGGCTCTCTTTAATTCTTTACGCAGTTGGTTTCATTCTCTATGCTTTAGGCAAAAAAGAATATG
GAACTAAAATGTCCACAACTGAAGTAATCGCAACCTTTATCTTGACAGTTTTAGGAATACTTGCTGTTTTTGGAGTATAT
GGAAACTGGCTTGGCTTGCAAGATGCACTGGGAATTGATGGAAATACTTTACTTGTCGCTGTAGTTCCATTGATCGTAGT
AACATTTATTGTTTACTTCGTGGTTCGTAGTGATATCAATAAAAAAGGAATTAAAAATTAA

Upstream 100 bases:

>100_bases
GAGCTGTCAGTAAACTGATAGATTTTGATTTAAGTCGTTGAAAGCAGTCTAAGATAGTTTTTAGACTGTTTTGACGGTTA
AAATCATTGAAAGGATTGAT

Downstream 100 bases:

>100_bases
TCAAAGGGGTATAAAAAATGGTAAGTCGTATTGTTGTAGCCCTTGGTGGGAATGCTATTTTGACAAAGGACCCATCAGCA
GCGGCTCAAAAAAAAGCGCT

Product: arginine/ornithine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARA
GFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAI
VLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMM
GDRAKRKSDAGKASIFGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSW
TMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKL
GIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGTKMSTTEVIATFILTVLGILAVFGVY
GNWLGLQDALGIDGNTLLVAVVPLIVVTFIVYFVVRSDINKKGIKN

Sequences:

>Translated_526_residues
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARA
GFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAI
VLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMM
GDRAKRKSDAGKASIFGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSW
TMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKL
GIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGTKMSTTEVIATFILTVLGILAVFGVY
GNWLGLQDALGIDGNTLLVAVVPLIVVTFIVYFVVRSDINKKGIKN
>Mature_526_residues
MDAENKKGIGLAALVAIIVSGAIGGGVFNLSNDLATNASPGGVVISWIVIGFGILMLVLSLNHLVVNKPELSGVSDYARA
GFGNMVGFISGWGYWLSAWAGNIAFAVLMMTSVDYFFPGVFQAKNGSLTILSVIVVSIVSWGLTLLVMRGVEGAAAINAI
VLVAKLIPLFVFVIAGIVTFKAGVFSAHFWQNFVANTNADGVIKSLTWSNMTGGDLFSQVKGSLMVMIWVFVGIEGAAMM
GDRAKRKSDAGKASIFGLIALLVIYILLSLLPFGFMSQQELANTGQPGLVHILNAMVGGWGGSLMAIGLVISLLGAWLSW
TMLPVEATQQLSEQKLLPSWFGKLNDKGAPKNSLLLTQLIVQIFLIVTYFVADAYNVFVYLCTAVIMICYALVGLYLFKL
GIQEKKTSNIIIGFIAAAFQILALYYSGWQFVWLSLILYAVGFILYALGKKEYGTKMSTTEVIATFILTVLGILAVFGVY
GNWLGLQDALGIDGNTLLVAVVPLIVVTFIVYFVVRSDINKKGIKN

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=482, Percent_Identity=32.5726141078838, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI2367353, Length=365, Percent_Identity=27.6712328767123, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1790575, Length=366, Percent_Identity=24.0437158469945, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786908, Length=467, Percent_Identity=23.1263383297645, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004754
- InterPro:   IPR022461 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 56407; Mature: 56407

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure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HCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9696763 [H]