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The map label for this gene is mrnC [H]

Identifier: 125624811

GI number: 125624811

Start: 2022177

End: 2022596

Strand: Reverse

Name: mrnC [H]

Synonym: llmg_2039

Alternate gene names: 125624811

Gene position: 2022596-2022177 (Counterclockwise)

Preceding gene: 125624812

Following gene: 125624810

Centisome position: 79.96

GC content: 40.0

Gene sequence:

>420_bases
ATGGGGTACGGTGGCATCGTGAATAAGCAACAAGCAGAACTTTTAAATGGAATTGCCCTTGCCTATGTGGGGGATGCAAT
ATTTGAAGTTTTTGTCCGCGATTACTTGTTAGAAAAGGGGCTGACAAAACCCGCTTTCCTTCAAAAAAATGCCACAAAAT
TTGTGTCAGCTAAAGCGCAAGCAAAAATCATCAGAGCCATGGAAGAAGTCGATTTTCTTACGGAATATGAACTCACATAT
TTCAAAAGAGGACGTAACGCTCACTCTAAAACTACGGCCAAAAATACCGATGTTGTCACTTATCGGATTTCAACTGGTTT
TGAAGCCGTCGTTGGGATTCTTCACTTGACGCAAGAAAATGAGCGTCTTAAAGAATTTTGGAATTTTTGTGTCGAAACAA
TCGAAAAAGATACAGCCTAA

Upstream 100 bases:

>100_bases
GAAGAGAGACAATTGGCACGAGAAGTCCGTGATTTTGCGAAATCAGATGAAATTCGTGATGCTTTGAAGGCTCAAGGAAT
TGTTCTTGAAGATACAAAAG

Downstream 100 bases:

>100_bases
AGATTACTGTCTGACAGAAAAAAGTATTAAGCAAATTATTTTAAAAAAAGAAAAAAATCCGCTAGAATAGGTATGCAAAG
ATACAAAGAAAAAAACAGCG

Product: ribonuclease III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MGYGGIVNKQQAELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRAMEEVDFLTEYELTY
FKRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQENERLKEFWNFCVETIEKDTA

Sequences:

>Translated_139_residues
MGYGGIVNKQQAELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRAMEEVDFLTEYELTY
FKRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQENERLKEFWNFCVETIEKDTA
>Mature_138_residues
GYGGIVNKQQAELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQAKIIRAMEEVDFLTEYELTYF
KRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQENERLKEFWNFCVETIEKDTA

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15750; Mature: 15619

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYGGIVNKQQAELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AKIIRAMEEVDFLTEYELTYFKRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQEN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCH
ERLKEFWNFCVETIEKDTA
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GYGGIVNKQQAELLNGIALAYVGDAIFEVFVRDYLLEKGLTKPAFLQKNATKFVSAKAQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
AKIIRAMEEVDFLTEYELTYFKRGRNAHSKTTAKNTDVVTYRISTGFEAVVGILHLTQEN
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCH
ERLKEFWNFCVETIEKDTA
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]