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The map label for this gene is oppB2 [H]

Identifier: 125624801

GI number: 125624801

Start: 2012112

End: 2013071

Strand: Reverse

Name: oppB2 [H]

Synonym: llmg_2026

Alternate gene names: 125624801

Gene position: 2013071-2012112 (Counterclockwise)

Preceding gene: 125624802

Following gene: 125624800

Centisome position: 79.58

GC content: 41.04

Gene sequence:

>960_bases
ATGTGGAAAGTAATTATTAGACGTGTTTTATTGATGATTCCGCAACTATTTATCCTGAGTATTCTTGTTTTCTTCTTTGC
TAAATTGATGCCAGGTGACCCTTTCTCTGGTTTAATTGGGCCACATACAGATCCACACGAAATTGAAGCTTTAAGGCGTG
CAGCTGGCCTGTACGACCCTTGGTGGGAACAATATCTCAGATGGTTGGGACATGCGATTCATGGAAATTTGGGGATGTCT
TATAATCTCAAAGAGCCTGTCACTACTGTCATTGGTCAACGAGCGGTTAATACTTTTTGGATGTCGCTTCTTTCTGTGAT
TTTGACCTATTTATTTGCTGTGCCCATGTCTATCGTTGCAGCCCGTCATGAGGGAAAATGGCAAGACCGTTTATGGTTGA
CATATAACTCGATTACTTTTGGTATTCCACCTTATGTTTTCTATTTGGTCATGATTTTTATCTTTGGTTATAGTTTAGGC
TGGTTTCCAACGGGTGGAACAGTGAGTCCAAATGCTGTTGGTTTTGTCGCCGTCTTTTTTAGTCGAATCTATCACATGAT
TCTTCCGGCTTTTAGCTTGGCAGTTTTTGGAACAGTCGCGATATTCACTTATTTCCGTTCAGGGATTTTGGATGAAGAAA
CGCAGGATTATGTGCGAACGGCGCGAGCTAAAGGAGTGAAGGAAAGAGTGATTTTCACTCGACATATCTTGAGAAACGCT
TCACTACCGATTGCGGCAAACTTTGGTTTTGTAATTACGGGACTTTTAGGAGGGGCGATATTTGCAGAAACGATTTTCGG
CTATCCTGGTTTGGGTCAACTTTTTATTACCTCAATCACTGGTCGAGATTATTCAATGATTACGGCTCTGATTTTGTTAA
ATGGTTTTCTGGGTTTATTAGGGGCCCTTTTGTCAGATATTATCATGGCAATTGTTGACCCTCGAATTCGGATTCAGTAA

Upstream 100 bases:

>100_bases
GAAACTAAAAAATCAATTTTTTATGATAAGGAGGGACGCGCTCTGCCCTTACAAGAATTAAGTAAAACACACTGGGCAGC
TTTACCAAAAGGAGGGGAAA

Downstream 100 bases:

>100_bases
GGAGTGAAAATGTCAGAAAAAAAACAAAAAAATTCTCTATCATTGATTCACTCAATCAAAGAAGAACTCAAACATGATAA
ACTGGCATTGATTTCAACAA

Product: peptide transport system permease protein oppB2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MWKVIIRRVLLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEIEALRRAAGLYDPWWEQYLRWLGHAIHGNLGMS
YNLKEPVTTVIGQRAVNTFWMSLLSVILTYLFAVPMSIVAARHEGKWQDRLWLTYNSITFGIPPYVFYLVMIFIFGYSLG
WFPTGGTVSPNAVGFVAVFFSRIYHMILPAFSLAVFGTVAIFTYFRSGILDEETQDYVRTARAKGVKERVIFTRHILRNA
SLPIAANFGFVITGLLGGAIFAETIFGYPGLGQLFITSITGRDYSMITALILLNGFLGLLGALLSDIIMAIVDPRIRIQ

Sequences:

>Translated_319_residues
MWKVIIRRVLLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEIEALRRAAGLYDPWWEQYLRWLGHAIHGNLGMS
YNLKEPVTTVIGQRAVNTFWMSLLSVILTYLFAVPMSIVAARHEGKWQDRLWLTYNSITFGIPPYVFYLVMIFIFGYSLG
WFPTGGTVSPNAVGFVAVFFSRIYHMILPAFSLAVFGTVAIFTYFRSGILDEETQDYVRTARAKGVKERVIFTRHILRNA
SLPIAANFGFVITGLLGGAIFAETIFGYPGLGQLFITSITGRDYSMITALILLNGFLGLLGALLSDIIMAIVDPRIRIQ
>Mature_319_residues
MWKVIIRRVLLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHEIEALRRAAGLYDPWWEQYLRWLGHAIHGNLGMS
YNLKEPVTTVIGQRAVNTFWMSLLSVILTYLFAVPMSIVAARHEGKWQDRLWLTYNSITFGIPPYVFYLVMIFIFGYSLG
WFPTGGTVSPNAVGFVAVFFSRIYHMILPAFSLAVFGTVAIFTYFRSGILDEETQDYVRTARAKGVKERVIFTRHILRNA
SLPIAANFGFVITGLLGGAIFAETIFGYPGLGQLFITSITGRDYSMITALILLNGFLGLLGALLSDIIMAIVDPRIRIQ

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=36.3636363636364, Blast_Score=204, Evalue=4e-54,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=31.9526627218935, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787497, Length=321, Percent_Identity=33.6448598130841, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=30, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787761, Length=331, Percent_Identity=28.0966767371601, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.6243093922652, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=27.2058823529412, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35873; Mature: 35873

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]