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The map label for this gene is oppC2 [H]

Identifier: 125624800

GI number: 125624800

Start: 2011218

End: 2012102

Strand: Reverse

Name: oppC2 [H]

Synonym: llmg_2025

Alternate gene names: 125624800

Gene position: 2012102-2011218 (Counterclockwise)

Preceding gene: 125624801

Following gene: 125624799

Centisome position: 79.55

GC content: 38.87

Gene sequence:

>885_bases
ATGTCAGAAAAAAAACAAAAAAATTCTCTATCATTGATTCACTCAATCAAAGAAGAACTCAAACATGATAAACTGGCATT
GATTTCAACAATTTTCCTTTTAGTTGTCTTTTTGACAGTTTATATCTACTCGATGTTTCTCAAGAAAGCAAATTATGTTG
ATGTCAATATCATGGACCAGTATCTGGCGCCTTTGACCAATGGTCATTTGCTGGGAACGGATAATGGTGGACGCGATATC
ATCATGATGCTAATGATTAGTGCGCGGAATTCCTTTAATATCGCCTTTGCAGTGACTTTGATTACCTTAGTTGTCGGGAA
TGTTTTAGGGGTGATTACGGGGTATTACGGGGGAAGGTTTGATTTAATCTTCATGCGTTTCACCGATTTTTGGATGATTT
TACCTAACTTGATGATTATTATCGTTTTTGTAACCATTATTCCGCGATTTAATGTTTGGTCCTTGATTTGGATTATTAGT
ATCTTTAATTGGATAGGAACAACACGTCTAATTCGGGCAAAAACATTGACAGAGGTTAATCGAGACTACGTTCGGGCTTC
TAAGACTTCGGGAACTTCAAATTTAAAAATTATGTTCCGAGAAATCTGGCCTAACTTATCGACTTTGGTTATCGCTGAGT
CTACTTTAGTCTTTGCCGGAAATATTGGGCTAGAAACAGGACTTTCTTTCTTGGGATTCGGACTTCCTGCAGGGACTCCT
TCTTTGGGGACGATGATTAGTGAGGCAACGAACCCAGAAACGATGACTGACAAACCTTGGACTTGGGTTCCAGCAACGGT
AGTCATCTTGATTGTGGTCCTTGCAATTATTTTCATCGGTAATGCACTAAGACGCGTTGCTGACCAAAGACAAGCAGTAA
GATAA

Upstream 100 bases:

>100_bases
GATTTTGTTAAATGGTTTTCTGGGTTTATTAGGGGCCCTTTTGTCAGATATTATCATGGCAATTGTTGACCCTCGAATTC
GGATTCAGTAAGGAGTGAAA

Downstream 100 bases:

>100_bases
AATAATAATATCAGAATATAAAAAATAGTTTGACAAAAATAAAATTAGTGATATAATCTAAAAATTCTAGTTAAACTAGA
AATAAAACTTAATTTTTCGG

Product: oligopeptide transport system permease protein oppC2

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSEKKQKNSLSLIHSIKEELKHDKLALISTIFLLVVFLTVYIYSMFLKKANYVDVNIMDQYLAPLTNGHLLGTDNGGRDI
IMMLMISARNSFNIAFAVTLITLVVGNVLGVITGYYGGRFDLIFMRFTDFWMILPNLMIIIVFVTIIPRFNVWSLIWIIS
IFNWIGTTRLIRAKTLTEVNRDYVRASKTSGTSNLKIMFREIWPNLSTLVIAESTLVFAGNIGLETGLSFLGFGLPAGTP
SLGTMISEATNPETMTDKPWTWVPATVVILIVVLAIIFIGNALRRVADQRQAVR

Sequences:

>Translated_294_residues
MSEKKQKNSLSLIHSIKEELKHDKLALISTIFLLVVFLTVYIYSMFLKKANYVDVNIMDQYLAPLTNGHLLGTDNGGRDI
IMMLMISARNSFNIAFAVTLITLVVGNVLGVITGYYGGRFDLIFMRFTDFWMILPNLMIIIVFVTIIPRFNVWSLIWIIS
IFNWIGTTRLIRAKTLTEVNRDYVRASKTSGTSNLKIMFREIWPNLSTLVIAESTLVFAGNIGLETGLSFLGFGLPAGTP
SLGTMISEATNPETMTDKPWTWVPATVVILIVVLAIIFIGNALRRVADQRQAVR
>Mature_293_residues
SEKKQKNSLSLIHSIKEELKHDKLALISTIFLLVVFLTVYIYSMFLKKANYVDVNIMDQYLAPLTNGHLLGTDNGGRDII
MMLMISARNSFNIAFAVTLITLVVGNVLGVITGYYGGRFDLIFMRFTDFWMILPNLMIIIVFVTIIPRFNVWSLIWIISI
FNWIGTTRLIRAKTLTEVNRDYVRASKTSGTSNLKIMFREIWPNLSTLVIAESTLVFAGNIGLETGLSFLGFGLPAGTPS
LGTMISEATNPETMTDKPWTWVPATVVILIVVLAIIFIGNALRRVADQRQAVR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788505, Length=233, Percent_Identity=33.0472103004292, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787498, Length=291, Percent_Identity=28.8659793814433, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789964, Length=227, Percent_Identity=37.4449339207048, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787054, Length=284, Percent_Identity=25.7042253521127, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1787760, Length=273, Percent_Identity=26.007326007326, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=30.5439330543933, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787549, Length=218, Percent_Identity=27.9816513761468, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33004; Mature: 32873

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKKQKNSLSLIHSIKEELKHDKLALISTIFLLVVFLTVYIYSMFLKKANYVDVNIMDQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
YLAPLTNGHLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVVGNVLGVITGYYGGRF
HHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DLIFMRFTDFWMILPNLMIIIVFVTIIPRFNVWSLIWIISIFNWIGTTRLIRAKTLTEVN
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYVRASKTSGTSNLKIMFREIWPNLSTLVIAESTLVFAGNIGLETGLSFLGFGLPAGTP
HHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCCHHHHHHHHHCCCCCCCC
SLGTMISEATNPETMTDKPWTWVPATVVILIVVLAIIFIGNALRRVADQRQAVR
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEKKQKNSLSLIHSIKEELKHDKLALISTIFLLVVFLTVYIYSMFLKKANYVDVNIMDQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHH
YLAPLTNGHLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVVGNVLGVITGYYGGRF
HHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DLIFMRFTDFWMILPNLMIIIVFVTIIPRFNVWSLIWIISIFNWIGTTRLIRAKTLTEVN
EEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYVRASKTSGTSNLKIMFREIWPNLSTLVIAESTLVFAGNIGLETGLSFLGFGLPAGTP
HHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECEEEEECCCCHHHHHHHHHCCCCCCCC
SLGTMISEATNPETMTDKPWTWVPATVVILIVVLAIIFIGNALRRVADQRQAVR
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]