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The map label for this gene is ybiR [C]

Identifier: 125624738

GI number: 125624738

Start: 1941491

End: 1942669

Strand: Reverse

Name: ybiR [C]

Synonym: llmg_1960

Alternate gene names: 125624738

Gene position: 1942669-1941491 (Counterclockwise)

Preceding gene: 125624739

Following gene: 125624737

Centisome position: 76.8

GC content: 36.22

Gene sequence:

>1179_bases
GTGGAACATTCAGCTACTCAGCGCGAATACCAAAAAATCTGGACGGCCATTAAAAACTGGTTTCTAGTGGACAAAGTTTT
TCTGATTTCGTTTATTATTGCAATTATTGCCATTAGTTTGGGTGGAGTGACAACTCGTTTTTTCAATTATCATGTCATTG
TTACGGTTTCAGGATTGATGCTTGTAATTGGTGGTTTTAAGGAAACAGGATTGTTACAGTATTTGGGACAGACCTTAATC
AAAAGAAGTACAACAACGCGTCAGCTTGTTCGATTTACGACGCTACTTACCTTCTTTTTAGCCGTTTTTTTTACAAACGA
TTTAACAATTTTGACGGTTTTACCGCTCTATTTAGCGATTACTAAAGAAATTAAAAATCGAAAATCAGTTTATATTGGGG
CAGCTTTAATTGTTCCAGCTTGTCATATCGGTTCTGCCTTGCTTCCGCAAGGAAATCCGCATAATCTCTATCTTTATTCG
TTTTATAAGGTAGCGGCACATCATGGTGGTGTTCCTCTGACAAATTTAGACTTTTTCAAAGGAACTGGGGCTTTATGGAT
TTTAGGTTTATTGATTTTGATGATTGCTTGTCAATTCATCGATAATGAGCCTTTGGTTATTGAAACTAAAGTGAATCAAT
TTAATAAAGTTGAAACTTCTATCTTCGTTGTTTTGATGTTGTTAATGGCAGCTTCTGTTTTTGGTTATGTGAATTTTTAT
CTTGCTGGAGCAATCGTTGCTCTAGTTGTGCTAATTTATCGTCCGCGACTTTTTAAAGGAATTGATTATCATCTTTTATT
TACTTTTATCTTTTTCTTTTTGATTGTGGGTAATATCGCTAATATTCATGTGTTGACTGATTTTATCAGTAATACCTTAG
TTGGACCACAGGCTTCTTTTTTAGGAACCGTGATTATGAGCCAGTTTATTTCTAATATTGCGGCCCCCATCTTGATTTCG
CCATTTACTCCCCATGCTGTTTCTTTGGTCCTTGGAGCTGATATTGGTGGGATTGGAACAATTGTTTCCTCTATGGCAAC
ACTGATTGCTTATAAGGTGATTCGGATGAATGCGCGGGGCGAAACGCGTGGTTTCGTAAAATATTTTACAATTGTCAATG
CCGGATTTGTCCTAATTTTAACACTGATTGGTTTGATTATTGTGACACTTGTTGGTTAA

Upstream 100 bases:

>100_bases
AAAATAATTCGCTTTTAAGTGAGAAAAAGCTTGTCACTGGTATCTTTAGATGTTATAATTTATTGTGGTGCAAAATTTTA
TATGCTAGTTAGGAGAAGTA

Downstream 100 bases:

>100_bases
AATGTAAAAGTTGGACTTTCCAACTTTTTTTATTTTTCAAAAAATTGAAAGTTACTGACAGGTCTCATAGTCACTTTTAT
TTATTTTTAAAATTTTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MEHSATQREYQKIWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNYHVIVTVSGLMLVIGGFKETGLLQYLGQTLI
KRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAITKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYS
FYKVAAHHGGVPLTNLDFFKGTGALWILGLLILMIACQFIDNEPLVIETKVNQFNKVETSIFVVLMLLMAASVFGYVNFY
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANIHVLTDFISNTLVGPQASFLGTVIMSQFISNIAAPILIS
PFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARGETRGFVKYFTIVNAGFVLILTLIGLIIVTLVG

Sequences:

>Translated_392_residues
MEHSATQREYQKIWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNYHVIVTVSGLMLVIGGFKETGLLQYLGQTLI
KRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAITKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYS
FYKVAAHHGGVPLTNLDFFKGTGALWILGLLILMIACQFIDNEPLVIETKVNQFNKVETSIFVVLMLLMAASVFGYVNFY
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANIHVLTDFISNTLVGPQASFLGTVIMSQFISNIAAPILIS
PFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARGETRGFVKYFTIVNAGFVLILTLIGLIIVTLVG
>Mature_392_residues
MEHSATQREYQKIWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNYHVIVTVSGLMLVIGGFKETGLLQYLGQTLI
KRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAITKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYS
FYKVAAHHGGVPLTNLDFFKGTGALWILGLLILMIACQFIDNEPLVIETKVNQFNKVETSIFVVLMLLMAASVFGYVNFY
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANIHVLTDFISNTLVGPQASFLGTVIMSQFISNIAAPILIS
PFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARGETRGFVKYFTIVNAGFVLILTLIGLIIVTLVG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=323, Percent_Identity=25.6965944272446, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 43276; Mature: 43276

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHSATQREYQKIWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNYHVIVTVSGLM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEHHHHH
LVIGGFKETGLLQYLGQTLIKRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAI
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYSFYKVAAHHGGVPLTNLDFFK
HHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCHHC
GTGALWILGLLILMIACQFIDNEPLVIETKVNQFNKVETSIFVVLMLLMAASVFGYVNFY
CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANIHVLTDFISNTLVGPQASF
HHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHH
LGTVIMSQFISNIAAPILISPFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARG
HHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
ETRGFVKYFTIVNAGFVLILTLIGLIIVTLVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEHSATQREYQKIWTAIKNWFLVDKVFLISFIIAIIAISLGGVTTRFFNYHVIVTVSGLM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEHHHHH
LVIGGFKETGLLQYLGQTLIKRSTTTRQLVRFTTLLTFFLAVFFTNDLTILTVLPLYLAI
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TKEIKNRKSVYIGAALIVPACHIGSALLPQGNPHNLYLYSFYKVAAHHGGVPLTNLDFFK
HHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCHHC
GTGALWILGLLILMIACQFIDNEPLVIETKVNQFNKVETSIFVVLMLLMAASVFGYVNFY
CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGAIVALVVLIYRPRLFKGIDYHLLFTFIFFFLIVGNIANIHVLTDFISNTLVGPQASF
HHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHH
LGTVIMSQFISNIAAPILISPFTPHAVSLVLGADIGGIGTIVSSMATLIAYKVIRMNARG
HHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
ETRGFVKYFTIVNAGFVLILTLIGLIIVTLVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]