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The map label for this gene is xylS [H]

Identifier: 125624625

GI number: 125624625

Start: 1817071

End: 1819290

Strand: Reverse

Name: xylS [H]

Synonym: llmg_1836

Alternate gene names: 125624625

Gene position: 1819290-1817071 (Counterclockwise)

Preceding gene: 125624626

Following gene: 125624624

Centisome position: 71.92

GC content: 34.86

Gene sequence:

>2220_bases
ATGGTCAGTGAATTAGAAAGTAAATATATGAATAATAATATTATAAAATTTGATAAAGCTAGATTCACGGTTTTGACTGA
GCACTTGATTCGTATTGAGTATAGTGAGACCGGTGAATTTGAAGAAAGAATGACACAAATGGTACAAAATCGAGAGTTTT
CTGAGGTCAATTTTGATATCATTGAAAAAGAAGAGACGATTGAAATTATCACCTCAACGGTTCATCTTTATTACAATGGT
GGAGAATTTACAAATGCGAGTTTATTTGCTGATGTAAAATTTAACTTTTCTGTTTATTCAAATCGCTGGTATTTTGGTGA
AAAATCTGATGGGAATTTAAAAGGAACAACTAGAACCTTGGATATGATTGATGGTGAATGTCCTTTAGAGGATGGGATTA
TGTCTAAAAATGGTTTTGCAGTCCTTGCGGATAAAGGAAAAGTTCTGACAGAAGTAGGAGATATTGCTGGTAATTCTGTC
AGCACAATTGATTTATATTTATTTGCTTATGGACGGGATTATAGACAAGCTCTGAAAGATTTTTATCAGCTGACAGGGAA
CACACCAAAGCTTCCTCGGTTTGCTTTGGGAAATTGGTGGAGTCGGTATTACGATTACAGTGATAAATCATATTTGGCTT
TGATGGATAAATTTACTGATAAGAAAGTTCCCTTATCTGTCAGTGTGATTGATATGGATTGGCATAAAGTATCAGAGGTT
CCAAGTCGTTTTGGTTCTGGATGGACAGGCTATTCATGGAATAAAAAGTTATTTCCTAATCCAGAAAATTTTATTGATGA
ATTGCATCAAAGAAAACTGAAAGTAACTTTGAATGACCATCCAGCTGATGGAATTCGTGCTTTTGAAGACCCTTATCCAC
AGGTTGCTCAAACGCTGGATTTAAATACAGAATTAGAAGAGGCAGCAAAATTTGATTTTGACAATCTAAAATTTCGAAAA
GCTTATTTTGAAGAGGTTCATGGACCTTTAGAAAAAGAAGGCGTTGATTTTTGGTGGATTGATTGGCAACAAGGGGCAAT
CTCTAAATCAGGAGTTGACCCACTTTGGTTACTCAATCATTATCAATATCAAAATGCTCAAAAGAAGCATAAAAATAATA
TCATCTTGAGCCGTTATGCTGGACCCGGGAGTCATCGATATCCTTTAGGATTTTCGGGAGATTCAGTCATTTCATGGGCA
AGCTTGGATTTTCAGCCTTATTTTACGAGTACAGCTTCAAATATTGGCTATACTTGGTGGAGCCATGATATTGGGGGGCA
CATGCAAGGTTACAAAGATGCGGAGCTCAGTTTAAGGTGGTTGCAATTTGGGGTATTTTCACCAATCAATCGACTTCATT
CCTCAAAATCAGAATTCACTAGTAAAGAGCCCTGGCATTTTGATGCGGTGATTGAACAATCAATGATTGACTTTTTACAA
CTTCGTCATCAATTAATTCCATATCTTTATAGCGCCAATTTAATAACAGCTTCTGAAGGTAGAGCACTTGTTGAACCACT
CTACTATGAATATCCGATGGAAGAAGAAGCTTATCAGCATCGAAATCAATATCTTTTTGGTGAACAACTGATGGTAGCAC
CGATTACCGAAAAAATGAATTCTCTTTTACAGATGGGAAGTGTGGAGGTTTGGTTTCCAGAAGGAACTTGGTATGATTTT
TTTAGCGGTCAACCTTATGATGGGAAGGTCAGCCTGAAAGTTTATCGAGAAATAACAGAAATGCCTGTTTTCGCTAAAGC
AGGAGCTATTATTCCACTAGATAAAAATCCTCTAAAAAAAGAAGAAATTCCTAGTGAGATAATCTGGAAAATATTTCCTG
GAGCCGATGGTGAGTATCTTTTATTAGAAGAAGACAACGAAACTAAAGCAGAATTTGTCAATGGAATTTTTACAGTTACA
AGTAAAAAAGAAAGTTCTCGCAAACATACGATTATTTACGGGGAACATGAAATTGTATCTGCTAAAAGAGGAGAATTTTC
TATTGATTTAAATGGAAAAGAAGAAAATTTCGATTGGAATTTTTCTACTGCTTTGTTTAGAAGATTAGATATTGCAGAAA
TTTCTTATGAGCAAAAAGATGAAATTTTACAGCAGCTCTCTTTGATTGAAGAACATGAAAAACAAGTGGCCTTTATCAAA
ACAAATGAAAATCAAGAATTACAAAATAGTCTATTTGAATTACTTTACAGTGGAAAATAA

Upstream 100 bases:

>100_bases
TTTCTGTGATTAATCTTGTCAATTCAATCATGATTAAACAAGTTTTTGACAGAATTGAAAGAGTGACTCATTAGATTATA
GTGAGATATCTACTGACAGG

Downstream 100 bases:

>100_bases
AGAGGAAGCTTTGTATAATAGGATGACAGAGGTTCTGAAAACTTAAACATATAGGTGAATGCTTCCTCTTGTTAGAAACG
AAGACTATGACAAAAATCAC

Product: alpha-xylosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MVSELESKYMNNNIIKFDKARFTVLTEHLIRIEYSETGEFEERMTQMVQNREFSEVNFDIIEKEETIEIITSTVHLYYNG
GEFTNASLFADVKFNFSVYSNRWYFGEKSDGNLKGTTRTLDMIDGECPLEDGIMSKNGFAVLADKGKVLTEVGDIAGNSV
STIDLYLFAYGRDYRQALKDFYQLTGNTPKLPRFALGNWWSRYYDYSDKSYLALMDKFTDKKVPLSVSVIDMDWHKVSEV
PSRFGSGWTGYSWNKKLFPNPENFIDELHQRKLKVTLNDHPADGIRAFEDPYPQVAQTLDLNTELEEAAKFDFDNLKFRK
AYFEEVHGPLEKEGVDFWWIDWQQGAISKSGVDPLWLLNHYQYQNAQKKHKNNIILSRYAGPGSHRYPLGFSGDSVISWA
SLDFQPYFTSTASNIGYTWWSHDIGGHMQGYKDAELSLRWLQFGVFSPINRLHSSKSEFTSKEPWHFDAVIEQSMIDFLQ
LRHQLIPYLYSANLITASEGRALVEPLYYEYPMEEEAYQHRNQYLFGEQLMVAPITEKMNSLLQMGSVEVWFPEGTWYDF
FSGQPYDGKVSLKVYREITEMPVFAKAGAIIPLDKNPLKKEEIPSEIIWKIFPGADGEYLLLEEDNETKAEFVNGIFTVT
SKKESSRKHTIIYGEHEIVSAKRGEFSIDLNGKEENFDWNFSTALFRRLDIAEISYEQKDEILQQLSLIEEHEKQVAFIK
TNENQELQNSLFELLYSGK

Sequences:

>Translated_739_residues
MVSELESKYMNNNIIKFDKARFTVLTEHLIRIEYSETGEFEERMTQMVQNREFSEVNFDIIEKEETIEIITSTVHLYYNG
GEFTNASLFADVKFNFSVYSNRWYFGEKSDGNLKGTTRTLDMIDGECPLEDGIMSKNGFAVLADKGKVLTEVGDIAGNSV
STIDLYLFAYGRDYRQALKDFYQLTGNTPKLPRFALGNWWSRYYDYSDKSYLALMDKFTDKKVPLSVSVIDMDWHKVSEV
PSRFGSGWTGYSWNKKLFPNPENFIDELHQRKLKVTLNDHPADGIRAFEDPYPQVAQTLDLNTELEEAAKFDFDNLKFRK
AYFEEVHGPLEKEGVDFWWIDWQQGAISKSGVDPLWLLNHYQYQNAQKKHKNNIILSRYAGPGSHRYPLGFSGDSVISWA
SLDFQPYFTSTASNIGYTWWSHDIGGHMQGYKDAELSLRWLQFGVFSPINRLHSSKSEFTSKEPWHFDAVIEQSMIDFLQ
LRHQLIPYLYSANLITASEGRALVEPLYYEYPMEEEAYQHRNQYLFGEQLMVAPITEKMNSLLQMGSVEVWFPEGTWYDF
FSGQPYDGKVSLKVYREITEMPVFAKAGAIIPLDKNPLKKEEIPSEIIWKIFPGADGEYLLLEEDNETKAEFVNGIFTVT
SKKESSRKHTIIYGEHEIVSAKRGEFSIDLNGKEENFDWNFSTALFRRLDIAEISYEQKDEILQQLSLIEEHEKQVAFIK
TNENQELQNSLFELLYSGK
>Mature_739_residues
MVSELESKYMNNNIIKFDKARFTVLTEHLIRIEYSETGEFEERMTQMVQNREFSEVNFDIIEKEETIEIITSTVHLYYNG
GEFTNASLFADVKFNFSVYSNRWYFGEKSDGNLKGTTRTLDMIDGECPLEDGIMSKNGFAVLADKGKVLTEVGDIAGNSV
STIDLYLFAYGRDYRQALKDFYQLTGNTPKLPRFALGNWWSRYYDYSDKSYLALMDKFTDKKVPLSVSVIDMDWHKVSEV
PSRFGSGWTGYSWNKKLFPNPENFIDELHQRKLKVTLNDHPADGIRAFEDPYPQVAQTLDLNTELEEAAKFDFDNLKFRK
AYFEEVHGPLEKEGVDFWWIDWQQGAISKSGVDPLWLLNHYQYQNAQKKHKNNIILSRYAGPGSHRYPLGFSGDSVISWA
SLDFQPYFTSTASNIGYTWWSHDIGGHMQGYKDAELSLRWLQFGVFSPINRLHSSKSEFTSKEPWHFDAVIEQSMIDFLQ
LRHQLIPYLYSANLITASEGRALVEPLYYEYPMEEEAYQHRNQYLFGEQLMVAPITEKMNSLLQMGSVEVWFPEGTWYDF
FSGQPYDGKVSLKVYREITEMPVFAKAGAIIPLDKNPLKKEEIPSEIIWKIFPGADGEYLLLEEDNETKAEFVNGIFTVT
SKKESSRKHTIIYGEHEIVSAKRGEFSIDLNGKEENFDWNFSTALFRRLDIAEISYEQKDEILQQLSLIEEHEKQVAFIK
TNENQELQNSLFELLYSGK

Specific function: Catalyzes the liberation of alpha-xylose from the non- reducing terminal glucose of xyloglucan oligosaccharides. Has high hydrolytic activity on the disaccharide isoprimeverose. Follows a retaining mechanism of substrate hydrolysis [H]

COG id: COG1501

COG function: function code G; Alpha-glucosidases, family 31 of glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 31 family [H]

Homologues:

Organism=Homo sapiens, GI66346737, Length=475, Percent_Identity=24.4210526315789, Blast_Score=128, Evalue=2e-29,
Organism=Homo sapiens, GI88900491, Length=476, Percent_Identity=23.5294117647059, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI38202257, Length=476, Percent_Identity=23.5294117647059, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI310115361, Length=263, Percent_Identity=24.3346007604563, Blast_Score=94, Evalue=6e-19,
Organism=Homo sapiens, GI221316699, Length=223, Percent_Identity=25.1121076233184, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI119393895, Length=196, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI119393893, Length=196, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI119393891, Length=196, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI157364974, Length=298, Percent_Identity=23.8255033557047, Blast_Score=86, Evalue=2e-16,
Organism=Escherichia coli, GI2367256, Length=568, Percent_Identity=23.5915492957746, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI2367323, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17560800, Length=616, Percent_Identity=22.2402597402597, Blast_Score=112, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17560798, Length=616, Percent_Identity=22.2402597402597, Blast_Score=112, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71985706, Length=232, Percent_Identity=30.1724137931034, Blast_Score=103, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71991189, Length=306, Percent_Identity=26.1437908496732, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI32563849, Length=300, Percent_Identity=23.3333333333333, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6319706, Length=228, Percent_Identity=27.1929824561404, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24643749, Length=227, Percent_Identity=29.0748898678414, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24643753, Length=227, Percent_Identity=29.0748898678414, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24643751, Length=227, Percent_Identity=29.0748898678414, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24643746, Length=227, Percent_Identity=29.0748898678414, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21357605, Length=227, Percent_Identity=29.0748898678414, Blast_Score=97, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011013
- InterPro:   IPR000322
- InterPro:   IPR017853 [H]

Pfam domain/function: PF01055 Glyco_hydro_31 [H]

EC number: NA

Molecular weight: Translated: 85764; Mature: 85764

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSELESKYMNNNIIKFDKARFTVLTEHLIRIEYSETGEFEERMTQMVQNREFSEVNFDI
CCCHHHHHHHCCCCEEECCHHHHHEEHHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
IEKEETIEIITSTVHLYYNGGEFTNASLFADVKFNFSVYSNRWYFGEKSDGNLKGTTRTL
ECCHHHHEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECEEEECCCCCCCCCCCEEEE
DMIDGECPLEDGIMSKNGFAVLADKGKVLTEVGDIAGNSVSTIDLYLFAYGRDYRQALKD
EECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH
FYQLTGNTPKLPRFALGNWWSRYYDYSDKSYLALMDKFTDKKVPLSVSVIDMDWHKVSEV
HHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHH
PSRFGSGWTGYSWNKKLFPNPENFIDELHQRKLKVTLNDHPADGIRAFEDPYPQVAQTLD
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCHHHCCCCHHHHHHCC
LNTELEEAAKFDFDNLKFRKAYFEEVHGPLEKEGVDFWWIDWQQGAISKSGVDPLWLLNH
CCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCCCCCCEEHHHH
YQYQNAQKKHKNNIILSRYAGPGSHRYPLGFSGDSVISWASLDFQPYFTSTASNIGYTWW
HHHHCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
SHDIGGHMQGYKDAELSLRWLQFGVFSPINRLHSSKSEFTSKEPWHFDAVIEQSMIDFLQ
CCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHH
LRHQLIPYLYSANLITASEGRALVEPLYYEYPMEEEAYQHRNQYLFGEQLMVAPITEKMN
HHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHCCEECCCCEEEEHHHHHHH
SLLQMGSVEVWFPEGTWYDFFSGQPYDGKVSLKVYREITEMPVFAKAGAIIPLDKNPLKK
HHHHHCCEEEEECCCCEEECCCCCCCCCEEEHHHHHHHHHCCCCHHCCEEEECCCCCCCH
EEIPSEIIWKIFPGADGEYLLLEEDNETKAEFVNGIFTVTSKKESSRKHTIIYGEHEIVS
HHCCHHHEEEEECCCCCCEEEEECCCCHHHHHHCCEEEEECCCCCCCCEEEEECCCEEEE
AKRGEFSIDLNGKEENFDWNFSTALFRRLDIAEISYEQKDEILQQLSLIEEHEKQVAFIK
CCCCCEEEEECCCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCEEEEEE
TNENQELQNSLFELLYSGK
ECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSELESKYMNNNIIKFDKARFTVLTEHLIRIEYSETGEFEERMTQMVQNREFSEVNFDI
CCCHHHHHHHCCCCEEECCHHHHHEEHHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
IEKEETIEIITSTVHLYYNGGEFTNASLFADVKFNFSVYSNRWYFGEKSDGNLKGTTRTL
ECCHHHHEEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECEEEECCCCCCCCCCCEEEE
DMIDGECPLEDGIMSKNGFAVLADKGKVLTEVGDIAGNSVSTIDLYLFAYGRDYRQALKD
EECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHH
FYQLTGNTPKLPRFALGNWWSRYYDYSDKSYLALMDKFTDKKVPLSVSVIDMDWHKVSEV
HHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHH
PSRFGSGWTGYSWNKKLFPNPENFIDELHQRKLKVTLNDHPADGIRAFEDPYPQVAQTLD
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCHHHCCCCHHHHHHCC
LNTELEEAAKFDFDNLKFRKAYFEEVHGPLEKEGVDFWWIDWQQGAISKSGVDPLWLLNH
CCCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCCCCCCEEHHHH
YQYQNAQKKHKNNIILSRYAGPGSHRYPLGFSGDSVISWASLDFQPYFTSTASNIGYTWW
HHHHCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
SHDIGGHMQGYKDAELSLRWLQFGVFSPINRLHSSKSEFTSKEPWHFDAVIEQSMIDFLQ
CCCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHH
LRHQLIPYLYSANLITASEGRALVEPLYYEYPMEEEAYQHRNQYLFGEQLMVAPITEKMN
HHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCHHHHHHHCCEECCCCEEEEHHHHHHH
SLLQMGSVEVWFPEGTWYDFFSGQPYDGKVSLKVYREITEMPVFAKAGAIIPLDKNPLKK
HHHHHCCEEEEECCCCEEECCCCCCCCCEEEHHHHHHHHHCCCCHHCCEEEECCCCCCCH
EEIPSEIIWKIFPGADGEYLLLEEDNETKAEFVNGIFTVTSKKESSRKHTIIYGEHEIVS
HHCCHHHEEEEECCCCCCEEEEECCCCHHHHHHCCEEEEECCCCCCCCEEEEECCCEEEE
AKRGEFSIDLNGKEENFDWNFSTALFRRLDIAEISYEQKDEILQQLSLIEEHEKQVAFIK
CCCCCEEEEECCCCCCCCCCHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCEEEEEE
TNENQELQNSLFELLYSGK
ECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10801892; 11427726 [H]