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The map label for this gene is ybbH [H]

Identifier: 125624236

GI number: 125624236

Start: 1391768

End: 1392619

Strand: Reverse

Name: ybbH [H]

Synonym: llmg_1425

Alternate gene names: 125624236

Gene position: 1392619-1391768 (Counterclockwise)

Preceding gene: 125624237

Following gene: 125624235

Centisome position: 55.06

GC content: 35.21

Gene sequence:

>852_bases
ATGGATACTTTACTTATCATCAGGCAAAATTATTCTAACTTTACAACAGTTGAGAAAAAAATAGCCGACTATATTTTTGA
AGTCGGAGAAAAAATGTTAGAAAAAAGTGCGCAAGAGGTAGCGAGTGAAATTGGAAGTTCTTCGGCGGCTTTAGTAAGAT
TTTCAAGAAAGTTGGGTTATGATGGATTCTCACAACTTAAACAAAAATTGAGTGCCTCCTATGCTGTTCATGAAGATGAT
GAAGATTATTATAAAGAAGTAAATGACTCTGAAACACCGTCCTCAATCAAGAATAAACTAAAAGTTCGGGTTAATCATAT
GGTGGAAACGACCAATGCAGCCTTATCAGATGATGAAATCATGGCGGCTGTCGCTTTAATTGATGAAGCAGAAAGTATTT
TTGTATTTGGTATTGGAGCATCATCTATGGTTGCTCAGGATATTTTTCAAAAGTTTAGTCGAATTGGAAAGCAAGTTTTC
TTTATTCAAGATGCTCATTTATTTGTTTCATCTCTTTCGATTTCGGATAGAAAAACAATTTTTATTGGCATTTCGATGAA
GGGAGAAACAAAGGAAGTAATTGAACTTGCACGAGTCGTAAGAGGGATGGAAATTCCAATTATTGCGATCACTTCAAGAG
AAGAATCGACACTCGGACAGATGTCAGATTATATCCTTCATTCAGTTTCTGGAGAAGATTATCAAATGCGTACGGCTGCC
ACCATGAGTTTGATGGCACAACTTTATGTTGTGGACATTCTTTTCTATATGTTTGTATCAGAGCATTTTACCGAGAGCTA
TGATAAGTTAGAAAAGACACGAGATGCAATTAAATTATTGGAAGAAAAATGA

Upstream 100 bases:

>100_bases
ATAAGTAAAGGTCAAGAAATTTTCACAGTAAAAGCATAAAAGTTAGAGGTTGGTTTATACCAACCTCTTTGTTATAATGA
AATAAGAATGGAGAGGATAC

Downstream 100 bases:

>100_bases
TAGAGCCGAAATTTACTGATGATGAGTTGATTTCTGCAATTTTTTTCACAATGTGATAAAATAGACCATGTAAAAGATGG
ATTAAAAGTCCAAAATTTAA

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGYDGFSQLKQKLSASYAVHEDD
EDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEIMAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVF
FIQDAHLFVSSLSISDRKTIFIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA
TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLLEEK

Sequences:

>Translated_283_residues
MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGYDGFSQLKQKLSASYAVHEDD
EDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEIMAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVF
FIQDAHLFVSSLSISDRKTIFIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA
TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLLEEK
>Mature_283_residues
MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGYDGFSQLKQKLSASYAVHEDD
EDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEIMAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVF
FIQDAHLFVSSLSISDRKTIFIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA
TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLLEEK

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=283, Percent_Identity=26.5017667844523, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788767, Length=275, Percent_Identity=26.9090909090909, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788159, Length=285, Percent_Identity=27.719298245614, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87082369, Length=267, Percent_Identity=22.8464419475655, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31930; Mature: 31930

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
DGFSQLKQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEI
CHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
MAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTI
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCCEE
FIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA
EEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHH
TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLLEEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDTLLIIRQNYSNFTTVEKKIADYIFEVGEKMLEKSAQEVASEIGSSSAALVRFSRKLGY
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
DGFSQLKQKLSASYAVHEDDEDYYKEVNDSETPSSIKNKLKVRVNHMVETTNAALSDDEI
CHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
MAAVALIDEAESIFVFGIGASSMVAQDIFQKFSRIGKQVFFIQDAHLFVSSLSISDRKTI
HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCCCCCEE
FIGISMKGETKEVIELARVVRGMEIPIIAITSREESTLGQMSDYILHSVSGEDYQMRTAA
EEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHH
TMSLMAQLYVVDILFYMFVSEHFTESYDKLEKTRDAIKLLEEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]