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The map label for this gene is potC [H]

Identifier: 125624146

GI number: 125624146

Start: 1302211

End: 1303011

Strand: Reverse

Name: potC [H]

Synonym: llmg_1326

Alternate gene names: 125624146

Gene position: 1303011-1302211 (Counterclockwise)

Preceding gene: 125624147

Following gene: 125624145

Centisome position: 51.51

GC content: 34.71

Gene sequence:

>801_bases
TTGCAAAAAAAAAATTCACTTGGTAAAGTTTACATCACCTTTGTCCTCATTCTTTTATATGCTCCTATTTTTTACCTTAT
CTTTTACTCATTTAATGCTGGAAGTGACATGAGTAAATTCACAGGTTTTACATTAGATAATTTCAAAACATTATTTGCTG
ACAGCCGTTTAATTTTGATTGTTGTTCAGACCTTCTTTCTAGATTTTTTAAGTTCACTCATTGCTACAGTCATCGGGACG
ATTGGGGCCATTAATCTTGTTAAATTAAAAAGAAGACGACGTGAAACTTTACTGGGTTTAAATAATGTCTTGATGGTTTC
TCCTGATGTAGTCATTGGTGCTTCCTTCTTGATTTTGTTTACAATTGTTGGAATGAAACTTGGCTTTATCTCCGTCTTAC
TCAGCCATATTGCCTTCTCCATACCTATTGTTGTGCTAATGGTCATGCCCCTTTATCAAGAAATGGACAGCTCACTAATT
GATGCTGCCAATGACTTAGGAGCAAATTCAAGCCAAATCATGCGTGAAATCATTTTACCTTATCTGACACCAGGAATTAT
TGCTGGTTTCTTTATGGCTTTTACCTATTCTTTAGATGATTTTGCCGTCACTTTCTTTGTTACAGGAAACGATTTTACAA
CACTGTCAGTAGAAATTTATTCCAGAGCCCGTGCCGGAATTTCTTTAGAAATTAATGCTCTCTCTACCCTTGTATTTCTC
TTTTCAATACTGTTGGTTGTAGGGTATTATTATATTATGAAAGATTCAGAAACCGTTGGAAAATCTTCAAATCTGACCTA
A

Upstream 100 bases:

>100_bases
TTAACTACCCAAAACTGGGGAATGGGTTCAACTATTGCCGTTGTATTGGTTGTAGCCATGTTGATTGTCATGAGAATGAC
CAAAGAAAGGAGAGATTAAA

Downstream 100 bases:

>100_bases
ATAGTTCTTATTGATACTTTGTAGTTCAAAGTATAGAAAGGAGAAACTTGAAAAAATTATTATACTTTTTTGTTGGAATT
CTGGTCATTACTGCTTCACT

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MQKKNSLGKVYITFVLILLYAPIFYLIFYSFNAGSDMSKFTGFTLDNFKTLFADSRLILIVVQTFFLDFLSSLIATVIGT
IGAINLVKLKRRRRETLLGLNNVLMVSPDVVIGASFLILFTIVGMKLGFISVLLSHIAFSIPIVVLMVMPLYQEMDSSLI
DAANDLGANSSQIMREIILPYLTPGIIAGFFMAFTYSLDDFAVTFFVTGNDFTTLSVEIYSRARAGISLEINALSTLVFL
FSILLVVGYYYIMKDSETVGKSSNLT

Sequences:

>Translated_266_residues
MQKKNSLGKVYITFVLILLYAPIFYLIFYSFNAGSDMSKFTGFTLDNFKTLFADSRLILIVVQTFFLDFLSSLIATVIGT
IGAINLVKLKRRRRETLLGLNNVLMVSPDVVIGASFLILFTIVGMKLGFISVLLSHIAFSIPIVVLMVMPLYQEMDSSLI
DAANDLGANSSQIMREIILPYLTPGIIAGFFMAFTYSLDDFAVTFFVTGNDFTTLSVEIYSRARAGISLEINALSTLVFL
FSILLVVGYYYIMKDSETVGKSSNLT
>Mature_266_residues
MQKKNSLGKVYITFVLILLYAPIFYLIFYSFNAGSDMSKFTGFTLDNFKTLFADSRLILIVVQTFFLDFLSSLIATVIGT
IGAINLVKLKRRRRETLLGLNNVLMVSPDVVIGASFLILFTIVGMKLGFISVLLSHIAFSIPIVVLMVMPLYQEMDSSLI
DAANDLGANSSQIMREIILPYLTPGIIAGFFMAFTYSLDDFAVTFFVTGNDFTTLSVEIYSRARAGISLEINALSTLVFL
FSILLVVGYYYIMKDSETVGKSSNLT

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=236, Percent_Identity=35.5932203389831, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787081, Length=248, Percent_Identity=32.258064516129, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787714, Length=244, Percent_Identity=26.6393442622951, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788764, Length=166, Percent_Identity=28.3132530120482, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29528; Mature: 29528

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKNSLGKVYITFVLILLYAPIFYLIFYSFNAGSDMSKFTGFTLDNFKTLFADSRLILI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCHHHHH
VVQTFFLDFLSSLIATVIGTIGAINLVKLKRRRRETLLGLNNVLMVSPDVVIGASFLILF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
TIVGMKLGFISVLLSHIAFSIPIVVLMVMPLYQEMDSSLIDAANDLGANSSQIMREIILP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YLTPGIIAGFFMAFTYSLDDFAVTFFVTGNDFTTLSVEIYSRARAGISLEINALSTLVFL
HHCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEHEEHHHHCCCCEEEHHHHHHHHHH
FSILLVVGYYYIMKDSETVGKSSNLT
HHHHHHHHHHHHCCCCHHCCCCCCCC
>Mature Secondary Structure
MQKKNSLGKVYITFVLILLYAPIFYLIFYSFNAGSDMSKFTGFTLDNFKTLFADSRLILI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCHHHHH
VVQTFFLDFLSSLIATVIGTIGAINLVKLKRRRRETLLGLNNVLMVSPDVVIGASFLILF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHH
TIVGMKLGFISVLLSHIAFSIPIVVLMVMPLYQEMDSSLIDAANDLGANSSQIMREIILP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YLTPGIIAGFFMAFTYSLDDFAVTFFVTGNDFTTLSVEIYSRARAGISLEINALSTLVFL
HHCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEHEEHHHHCCCCEEEHHHHHHHHHH
FSILLVVGYYYIMKDSETVGKSSNLT
HHHHHHHHHHHHCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]