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The map label for this gene is rpiR [C]

Identifier: 125624136

GI number: 125624136

Start: 1287988

End: 1288809

Strand: Reverse

Name: rpiR [C]

Synonym: llmg_1316

Alternate gene names: 125624136

Gene position: 1288809-1287988 (Counterclockwise)

Preceding gene: 125624138

Following gene: 125624135

Centisome position: 50.95

GC content: 30.66

Gene sequence:

>822_bases
ATGAAAATTGAAACAGTCATTAAAGAAAAATATGAATTACTTACTAAATCAGAAAAGAAGATTGCAAATTATGTATTAGC
TTCAAAGGAGCGTATTGTTTATGGAACAATGAATGATATCAAAAAAGCAATCAAGGTTGGCGATGCAACCATAGTAAGAT
TTTGTCAAAAATTGGGTTATTCAGGATTTTCAGATCTTAAAATAGAAGTTGCTAAGGAAAGTTATTCTCAAAAGTCTTCT
AATAGAACAGATCTGAGCTTATTTTTTGATGAGAATGAAAATAGTATTATTGAGATTCTTCATGAAACAAAATCAAAATT
AGATTTAGAACAATTTGAAAAAAGTTCAAAATTAATTTCTGAAGCTTCGGCTATTTATATTTTTGGGGTAGGTTTAAGCG
GCAATACTGCGAAAGATTTAGAAGCGATGTTTCTTCGTATTGGAGTTCCAGTTAAAGCAATTAGTGACTCTCATTTTCAA
TTGCAAACAGCTGACCTATTAAAAAAGACAGATTTAATCATTGGCATTTCATTATCCGGTAAGACATTAGAATTATTTGA
ATCCATTAAGATTGCCAAAGAACAAAAAGCTCAGATTATTACAATTACCAGCTCAGATTATTCACCACTTGCCCAACTTT
CTGATATTAATTTGCAAACAGTGAATGAGGAGTTTTTTGATGGAGGCTCACTCACTGGAAAAATCTCACAATTATATATT
TGTGAAATTTTGGTTAAAAATCACGAGCGACTTTATAAAGATAAAGCAATTCAGAGTAGAGAAGCGATTATCAGAGCAGT
TATGGATAAGACAGTTGAGTAA

Upstream 100 bases:

>100_bases
TTACTCCATAATTAATATAGCATACGCTTACATTTTTGTCAATTATGATAAAATAAATTTAAGATACAAGAAATTATGAG
TTAATTACCAAAGGAAAATT

Downstream 100 bases:

>100_bases
CTTCTTTATTATTCAGCTTTTAGTGATGTTTGTTGAACCTTATTGAAATACTATGTTATAATATGGACATGACAAATTTC
AAGAAAAACGATATATTTGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGYSGFSDLKIEVAKESYSQKSS
NRTDLSLFFDENENSIIEILHETKSKLDLEQFEKSSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISDSHFQ
LQTADLLKKTDLIIGISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQTVNEEFFDGGSLTGKISQLYI
CEILVKNHERLYKDKAIQSREAIIRAVMDKTVE

Sequences:

>Translated_273_residues
MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGYSGFSDLKIEVAKESYSQKSS
NRTDLSLFFDENENSIIEILHETKSKLDLEQFEKSSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISDSHFQ
LQTADLLKKTDLIIGISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQTVNEEFFDGGSLTGKISQLYI
CEILVKNHERLYKDKAIQSREAIIRAVMDKTVE
>Mature_273_residues
MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGYSGFSDLKIEVAKESYSQKSS
NRTDLSLFFDENENSIIEILHETKSKLDLEQFEKSSKLISEASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISDSHFQ
LQTADLLKKTDLIIGISLSGKTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQTVNEEFFDGGSLTGKISQLYI
CEILVKNHERLYKDKAIQSREAIIRAVMDKTVE

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=241, Percent_Identity=28.2157676348548, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1788767, Length=245, Percent_Identity=30.2040816326531, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788159, Length=245, Percent_Identity=26.530612244898, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87082130, Length=232, Percent_Identity=25.8620689655172, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30641; Mature: 30641

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHCC
SGFSDLKIEVAKESYSQKSSNRTDLSLFFDENENSIIEILHETKSKLDLEQFEKSSKLIS
CCCCCCEEEEHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
EASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISDSHFQLQTADLLKKTDLIIGISLSG
CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCEEEHHHHHHHHCCEEEEEECCC
KTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQTVNEEFFDGGSLTGKISQLYI
CHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCEECCHHHCCCCCCCHHHHHHHH
CEILVKNHERLYKDKAIQSREAIIRAVMDKTVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIETVIKEKYELLTKSEKKIANYVLASKERIVYGTMNDIKKAIKVGDATIVRFCQKLGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCHHHHHHHHHHCC
SGFSDLKIEVAKESYSQKSSNRTDLSLFFDENENSIIEILHETKSKLDLEQFEKSSKLIS
CCCCCCEEEEHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
EASAIYIFGVGLSGNTAKDLEAMFLRIGVPVKAISDSHFQLQTADLLKKTDLIIGISLSG
CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCEEEHHHHHHHHCCEEEEEECCC
KTLELFESIKIAKEQKAQIITITSSDYSPLAQLSDINLQTVNEEFFDGGSLTGKISQLYI
CHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCEECCHHHCCCCCCCHHHHHHHH
CEILVKNHERLYKDKAIQSREAIIRAVMDKTVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]