Click here to switch to the map view.

The map label for this gene is gadR [H]

Identifier: 125624007

GI number: 125624007

Start: 1144571

End: 1145401

Strand: Direct

Name: gadR [H]

Synonym: llmg_1177

Alternate gene names: 125624007

Gene position: 1144571-1145401 (Clockwise)

Preceding gene: 125624006

Following gene: 125624008

Centisome position: 45.25

GC content: 29.24

Gene sequence:

>831_bases
ATGTATAAAAAATATGGAGATTGTTTTAAAAAGTTGCGAAACCAAAAGAATTTAGGGTTATCATACTTTAGTAAACTTGG
AATAGACCGTTCAAATATATCTAGATTTGAACATGGAAAATGTATGATGAGTTTTGAGCGTATAGATTTGATGTTAGAAG
AAATGCAAGTTCCGTTATCTGAGTACGAATTGATTGTAAATAATTTTATGCCGAATTTCCAAGAATTTTTTATATTAGAA
TTGGAAAAAGCTGAATTTAGCCAAAATCGAGATAAAATAAAAGAGTTGTATTCTGAGGTCAAAGAAACGGGGAATCATTT
ACTGACGGTTACCGTGAAAACGAAGCTTGGGAATATAAGTCAGACAGAAGTTAAAGAAATTGAAGCTTATCTTTGCAATA
TTGAAGAGTGGGGATATTTTGAACTTACTTTATTTTATTTTGTATCTGATTATCTCAATGTCAATCAATTAGAATTGCTG
CTTTTTAATTTTGATAAAAGATGTGAAAATTACTGTAGAGTCTTAAAATATAGAAGGAGACTATTGCAAATAGCCTATAA
AAGTGTTGCGATATACGCGGCTAAAGGAGAAAGAAAAAAAGCCGAAAATATTTTAGAAATGACTAAAAAATATCGAACTG
TGGGAGTCGATTTATATTCAGAAGTATTAAGACATCTTGCTAGAGCTATCATTATTTTTAATTTTGAAAATGCAGAGATT
GGGGAAGAAAAAATAAATTATGCTCTTGAGATTTTGGAAGAATTTGGAGGAAAGAAGATAAAAGAATTCTATCAGAATAA
AATGGAAAAGTATTTGAAAAGGTCAATTTAG

Upstream 100 bases:

>100_bases
CAGAAATAACAACTACATTGGTAGACTGATTAAAAAGTGTACTTGATGAACTGTTATAAACCTTAAAAAAATAAAAATAA
TAGTTTGGGGGATGTTAAAG

Downstream 100 bases:

>100_bases
TCTCTTTTGAGCTGTTGCTTTAAAGCAACAGCTCAAAAGAGATTTTCTTTATTCTAGAGCATATACTAGAGGGTGAAGAT
AGGTTGTCTGAAGCATTATA

Product: positive regulator GadR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MYKKYGDCFKKLRNQKNLGLSYFSKLGIDRSNISRFEHGKCMMSFERIDLMLEEMQVPLSEYELIVNNFMPNFQEFFILE
LEKAEFSQNRDKIKELYSEVKETGNHLLTVTVKTKLGNISQTEVKEIEAYLCNIEEWGYFELTLFYFVSDYLNVNQLELL
LFNFDKRCENYCRVLKYRRRLLQIAYKSVAIYAAKGERKKAENILEMTKKYRTVGVDLYSEVLRHLARAIIIFNFENAEI
GEEKINYALEILEEFGGKKIKEFYQNKMEKYLKRSI

Sequences:

>Translated_276_residues
MYKKYGDCFKKLRNQKNLGLSYFSKLGIDRSNISRFEHGKCMMSFERIDLMLEEMQVPLSEYELIVNNFMPNFQEFFILE
LEKAEFSQNRDKIKELYSEVKETGNHLLTVTVKTKLGNISQTEVKEIEAYLCNIEEWGYFELTLFYFVSDYLNVNQLELL
LFNFDKRCENYCRVLKYRRRLLQIAYKSVAIYAAKGERKKAENILEMTKKYRTVGVDLYSEVLRHLARAIIIFNFENAEI
GEEKINYALEILEEFGGKKIKEFYQNKMEKYLKRSI
>Mature_276_residues
MYKKYGDCFKKLRNQKNLGLSYFSKLGIDRSNISRFEHGKCMMSFERIDLMLEEMQVPLSEYELIVNNFMPNFQEFFILE
LEKAEFSQNRDKIKELYSEVKETGNHLLTVTVKTKLGNISQTEVKEIEAYLCNIEEWGYFELTLFYFVSDYLNVNQLELL
LFNFDKRCENYCRVLKYRRRLLQIAYKSVAIYAAKGERKKAENILEMTKKYRTVGVDLYSEVLRHLARAIIIFNFENAEI
GEEKINYALEILEEFGGKKIKEFYQNKMEKYLKRSI

Specific function: Regulates the expression of glucosyltransferase (gtfG) [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR010057 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 32991; Mature: 32991

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKKYGDCFKKLRNQKNLGLSYFSKLGIDRSNISRFEHGKCMMSFERIDLMLEEMQVPLS
CCCHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH
EYELIVNNFMPNFQEFFILELEKAEFSQNRDKIKELYSEVKETGNHLLTVTVKTKLGNIS
HHHHHHHHCCCCHHHHHHHEEHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC
QTEVKEIEAYLCNIEEWGYFELTLFYFVSDYLNVNQLELLLFNFDKRCENYCRVLKYRRR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLQIAYKSVAIYAAKGERKKAENILEMTKKYRTVGVDLYSEVLRHLARAIIIFNFENAEI
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
GEEKINYALEILEEFGGKKIKEFYQNKMEKYLKRSI
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYKKYGDCFKKLRNQKNLGLSYFSKLGIDRSNISRFEHGKCMMSFERIDLMLEEMQVPLS
CCCHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHH
EYELIVNNFMPNFQEFFILELEKAEFSQNRDKIKELYSEVKETGNHLLTVTVKTKLGNIS
HHHHHHHHCCCCHHHHHHHEEHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC
QTEVKEIEAYLCNIEEWGYFELTLFYFVSDYLNVNQLELLLFNFDKRCENYCRVLKYRRR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLQIAYKSVAIYAAKGERKKAENILEMTKKYRTVGVDLYSEVLRHLARAIIIFNFENAEI
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
GEEKINYALEILEEFGGKKIKEFYQNKMEKYLKRSI
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1534326 [H]