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The map label for this gene is ydeD [H]

Identifier: 125623857

GI number: 125623857

Start: 987722

End: 988609

Strand: Reverse

Name: ydeD [H]

Synonym: llmg_1021

Alternate gene names: 125623857

Gene position: 988609-987722 (Counterclockwise)

Preceding gene: 125623858

Following gene: 125623855

Centisome position: 39.08

GC content: 36.04

Gene sequence:

>888_bases
ATGACTAAATATAAAGGAATAATTTACGCTTCTTTGGGTGCCTCTTTTTTTGGTATTAGTAGTATTATTGCCGGAATTTT
ATTTAATCGTTGCTCCATAGAACCAGGTTGGTTAGTAACCACACGTATGCTTTTTTCTGGCTTATTATTATTAGCTTGGT
TGGCTTTAAGAAAAAATAATATTTTTAGCGTCTGGACTTCTCTTAAATCGAGTCTAAGGATTATTGCTTTTGGAATTTTT
GGTGTACTGTTTGCTCAAACTTCCTTCTTATTATCCGTTTTTTATGGAAATGCAGCCATCGCCACCATTTTACAATCTTT
GGGTCCCTCAATAATAATTATTATTTTGGCCATCAAAAGTAAAGCTATTCCACGACGGCTAGATATTATCGCCATTTTCC
TTTCATTAATTGGCGTTTTTCTCTTAGTCACTAACGGCAATCTAGGAGAGCTCAGTTTTTCTGCTTCTGCTCTTGTTTGG
GGCCTCTTATCAGCGCTCGGCGTTTGTGCTTACACACTCATTCCTTGCCCACTTATTAAAGAACATTCTCCACTAAATGT
CGTCGCTTGGGCTTTATTAATTGGTGGCCTTATTTCCAATTTCCTTCACCCCGTAACAAATTTACCTGCAAACTTTGACC
AAGTTGATTTACTTCTTGTCAGTCTAATTGTTATCGTTGGAACACTCTTAGCCTATTCTCTCTATATCAACAGTCTCAAA
TACATAGAGCCACATATCGTTGGGATGTTGGGAATGGTTGAACCGGTGACAGCGATACTCATCTCTACTTTATTTCTTGG
TATTTCTTTTTTAAGTTTCCAAAAAATTGGAATAGTAGTCGTCTTTTTATCCTTATTCCTTATTAATTTTCCAACGAAGA
AAAAATAA

Upstream 100 bases:

>100_bases
GACACACTTGAAAGCTTATTTGATTAATATTCTTCAACTCTACTTGAGTGTTTACACATAATTATTGACAGTATCAAGAA
AACCAATAATTGGTACATTT

Downstream 100 bases:

>100_bases
AAGACAAAGAGTATATTAATTACTCTTTGTCTTTTATTTATCTTATTTGAAAATGTCTCTTATTTCTGGTTTAACTTGCG
TTGTTCCAGGGATGAAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTKYKGIIYASLGASFFGISSIIAGILFNRCSIEPGWLVTTRMLFSGLLLLAWLALRKNNIFSVWTSLKSSLRIIAFGIF
GVLFAQTSFLLSVFYGNAAIATILQSLGPSIIIIILAIKSKAIPRRLDIIAIFLSLIGVFLLVTNGNLGELSFSASALVW
GLLSALGVCAYTLIPCPLIKEHSPLNVVAWALLIGGLISNFLHPVTNLPANFDQVDLLLVSLIVIVGTLLAYSLYINSLK
YIEPHIVGMLGMVEPVTAILISTLFLGISFLSFQKIGIVVVFLSLFLINFPTKKK

Sequences:

>Translated_295_residues
MTKYKGIIYASLGASFFGISSIIAGILFNRCSIEPGWLVTTRMLFSGLLLLAWLALRKNNIFSVWTSLKSSLRIIAFGIF
GVLFAQTSFLLSVFYGNAAIATILQSLGPSIIIIILAIKSKAIPRRLDIIAIFLSLIGVFLLVTNGNLGELSFSASALVW
GLLSALGVCAYTLIPCPLIKEHSPLNVVAWALLIGGLISNFLHPVTNLPANFDQVDLLLVSLIVIVGTLLAYSLYINSLK
YIEPHIVGMLGMVEPVTAILISTLFLGISFLSFQKIGIVVVFLSLFLINFPTKKK
>Mature_294_residues
TKYKGIIYASLGASFFGISSIIAGILFNRCSIEPGWLVTTRMLFSGLLLLAWLALRKNNIFSVWTSLKSSLRIIAFGIFG
VLFAQTSFLLSVFYGNAAIATILQSLGPSIIIIILAIKSKAIPRRLDIIAIFLSLIGVFLLVTNGNLGELSFSASALVWG
LLSALGVCAYTLIPCPLIKEHSPLNVVAWALLIGGLISNFLHPVTNLPANFDQVDLLLVSLIVIVGTLLAYSLYINSLKY
IEPHIVGMLGMVEPVTAILISTLFLGISFLSFQKIGIVVVFLSLFLINFPTKKK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=296, Percent_Identity=34.1216216216216, Blast_Score=143, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31995; Mature: 31864

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKYKGIIYASLGASFFGISSIIAGILFNRCSIEPGWLVTTRMLFSGLLLLAWLALRKNN
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
IFSVWTSLKSSLRIIAFGIFGVLFAQTSFLLSVFYGNAAIATILQSLGPSIIIIILAIKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHEEHHHHHHC
KAIPRRLDIIAIFLSLIGVFLLVTNGNLGELSFSASALVWGLLSALGVCAYTLIPCPLIK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EHSPLNVVAWALLIGGLISNFLHPVTNLPANFDQVDLLLVSLIVIVGTLLAYSLYINSLK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIEPHIVGMLGMVEPVTAILISTLFLGISFLSFQKIGIVVVFLSLFLINFPTKKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TKYKGIIYASLGASFFGISSIIAGILFNRCSIEPGWLVTTRMLFSGLLLLAWLALRKNN
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
IFSVWTSLKSSLRIIAFGIFGVLFAQTSFLLSVFYGNAAIATILQSLGPSIIIIILAIKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHEEHHHHHHC
KAIPRRLDIIAIFLSLIGVFLLVTNGNLGELSFSASALVWGLLSALGVCAYTLIPCPLIK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EHSPLNVVAWALLIGGLISNFLHPVTNLPANFDQVDLLLVSLIVIVGTLLAYSLYINSLK
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIEPHIVGMLGMVEPVTAILISTLFLGISFLSFQKIGIVVVFLSLFLINFPTKKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]