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The map label for this gene is xylR [H]

Identifier: 125623838

GI number: 125623838

Start: 967411

End: 968343

Strand: Reverse

Name: xylR [H]

Synonym: llmg_1001

Alternate gene names: 125623838

Gene position: 968343-967411 (Counterclockwise)

Preceding gene: 125623840

Following gene: 125623833

Centisome position: 38.28

GC content: 31.73

Gene sequence:

>933_bases
ATGAAAAACGAATTAGAGAATATTTATCACTCAAAAATAAATAATCTTAATTTTTTACTTGTTGATATTACTTACCGTAA
ACCTCATCTTCATTTTGTCATTGAATTAGCATTTGTCTTAGAAGGGCTCGGTACTGTAACCACTCAAGAAAATTTCTTTG
AAATCACTGCTGGACAAGCTATTATTTTTAATAGTTGTCAGGTTCATGAGCTTTCATCAAGTGACTCTATGAAACTGTTA
ATTCTGCAATTTTCATCAGAAATTTTTAAAATTATCTTCCCTCAACTTGATAAAATTTATTTTGAAAGTCACCCTTTCAA
TCTAGAAAATCAACCTGAAACCTTGAAATTACTCTTGCAAGCAGCCTTAAGTTATTTTGCAGATGATAAGAATAATTCTT
TACGAACTCACGGCTATACTTCACTTTTACTAGACCGTTTGTTAAGTATTTCTGAGTACAGTATTTTAAGCAGCTCTGAA
CAAAATAAATTGATGGACCTGCAAGAGCGAATGGAGCGGATTTCTTCCTACATTCATGAGAACTACGACCACAAAATTTC
TCTGGAAATGATTGCCTCACATGAAGGATTGTCCCGAACTTATTTTTCTCATTTCTTTAAAAGTAATTTTGGGATAAATT
TTAACGAATATTTAAATAAAATCCGTTCAGAAAAAGCAAGAACACTCCTTTCTTCTTCCAAAGATAATTTACTAAACATC
GCTTATATGTGTGGCTTTTCGGATATCCGAACGCTCAATACTGCTTTTGTCAAATCCTATGGCGTTTTGCCAAAAGATTT
TCGGAAAAACAATGTTCTCTTCCCCAATCTGAACTATATGACTTTCAATCAAGATAAAATTGATAATCAAGTTTTTTATT
CTGATAGGGGTTCTCTTGATATTTTGCAATACTATCTCGAAAAACAATTTTGA

Upstream 100 bases:

>100_bases
CCTCCTCTTTATGATATTAATATTATTTTCAAACTCGAAATTACTACTATACATTTGTTGTAATGTATGTCATAATAATA
GTGATTAGGAGAGAATGAAC

Downstream 100 bases:

>100_bases
AAAACAATTAATTTTAGCTCAATGTTTTCACTTGTTAATGATACCGCTTTCCAAAGAGTTTATCTTACTGATTTGTTCTT
TTTTTTAGGGGAAATGTTGT

Product: xylose operon regulator

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKNELENIYHSKINNLNFLLVDITYRKPHLHFVIELAFVLEGLGTVTTQENFFEITAGQAIIFNSCQVHELSSSDSMKLL
ILQFSSEIFKIIFPQLDKIYFESHPFNLENQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSE
QNKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLLNI
AYMCGFSDIRTLNTAFVKSYGVLPKDFRKNNVLFPNLNYMTFNQDKIDNQVFYSDRGSLDILQYYLEKQF

Sequences:

>Translated_310_residues
MKNELENIYHSKINNLNFLLVDITYRKPHLHFVIELAFVLEGLGTVTTQENFFEITAGQAIIFNSCQVHELSSSDSMKLL
ILQFSSEIFKIIFPQLDKIYFESHPFNLENQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSE
QNKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLLNI
AYMCGFSDIRTLNTAFVKSYGVLPKDFRKNNVLFPNLNYMTFNQDKIDNQVFYSDRGSLDILQYYLEKQF
>Mature_310_residues
MKNELENIYHSKINNLNFLLVDITYRKPHLHFVIELAFVLEGLGTVTTQENFFEITAGQAIIFNSCQVHELSSSDSMKLL
ILQFSSEIFKIIFPQLDKIYFESHPFNLENQPETLKLLLQAALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSE
QNKLMDLQERMERISSYIHENYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLLNI
AYMCGFSDIRTLNTAFVKSYGVLPKDFRKNNVLFPNLNYMTFNQDKIDNQVFYSDRGSLDILQYYLEKQF

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=103, Percent_Identity=34.9514563106796, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790339, Length=113, Percent_Identity=29.2035398230088, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36237; Mature: 36237

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNELENIYHSKINNLNFLLVDITYRKPHLHFVIELAFVLEGLGTVTTQENFFEITAGQA
CCCHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCE
IIFNSCQVHELSSSDSMKLLILQFSSEIFKIIFPQLDKIYFESHPFNLENQPETLKLLLQ
EEECCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
AALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSEQNKLMDLQERMERISSYIHE
HHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
NYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLLNI
CCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
AYMCGFSDIRTLNTAFVKSYGVLPKDFRKNNVLFPNLNYMTFNQDKIDNQVFYSDRGSLD
HHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCEECCCCCEEEECCCCCCCEEEECCCCCHH
ILQYYLEKQF
HHHHHHHHCC
>Mature Secondary Structure
MKNELENIYHSKINNLNFLLVDITYRKPHLHFVIELAFVLEGLGTVTTQENFFEITAGQA
CCCHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCE
IIFNSCQVHELSSSDSMKLLILQFSSEIFKIIFPQLDKIYFESHPFNLENQPETLKLLLQ
EEECCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
AALSYFADDKNNSLRTHGYTSLLLDRLLSISEYSILSSSEQNKLMDLQERMERISSYIHE
HHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
NYDHKISLEMIASHEGLSRTYFSHFFKSNFGINFNEYLNKIRSEKARTLLSSSKDNLLNI
CCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
AYMCGFSDIRTLNTAFVKSYGVLPKDFRKNNVLFPNLNYMTFNQDKIDNQVFYSDRGSLD
HHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCEECCCCCEEEECCCCCCCEEEECCCCCHH
ILQYYLEKQF
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA