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The map label for this gene is tnp1216

Identifier: 125623840

GI number: 125623840

Start: 969172

End: 969852

Strand: Reverse

Name: tnp1216

Synonym: llmg_1003

Alternate gene names: NA

Gene position: 969852-969172 (Counterclockwise)

Preceding gene: 125623852

Following gene: 125623838

Centisome position: 38.34

GC content: 37.59

Gene sequence:

>681_bases
ATGAATCATTTTAAAGGAAAGCAATTTCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAG
CTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTTTCTCATACGACGATTTATCGTTGGGTGCAAGAAT
ATGGCAAACTACTCTATCAAATTTGGAAGAAGAAAAATAAAAAATCCTTTTATTCATGGAAAATGGATGAAACGTACATC
AAAATTAAAGGAAAATGGCATTATTTGTATCGAGCCATCGATGCAGATGGTTTAACCTTGGATATTTGGTTACGTAAAAA
ACGGGACACACAAGCAGCCTATGCTTTTCTTAAGCGGTTAGTGAAGCAGTTTGATGAACCGAAGGTTGTAGTCACAGATA
AAGCCCCCTCTATTACAAGTGCCTTTAAGAAACTAAAAGAATACGGCTTTTATCAAGGGACAGAACATCGTACCATTAAA
TACCTGAATAATTTGATTGAACAAGACCATCGTCCAGTAAAGAGACGCAATAAATTCTATCGAAGTTTACGCACTGCCTC
ACCCACGATTAAAGGCATGGAAGCCATCCGAGGATTATATAAGAAAACCCGAAAAGAAGGCACTCTCTTCGGGTTTTCGG
TCTGTACTGAAATCAAGATATTATTGGGAATCCCAGCTTAA

Upstream 100 bases:

>100_bases
ACATTTTCTTCTGATAGAATTTTGACGGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAA
AGATAGCAGGAGGAATGACG

Downstream 100 bases:

>100_bases
ATCATAGATACCGTAAGGGATTTTATTCTTTATTTAAAACTTTGCAACAGAACCATTTTGCATAATCAATCGCCAAATGG
AAGAATTTTGCCATGTGATC

Product: transposase for insertion sequence-like element IS1216

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYI
KIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIK
YLNNLIEQDHRPVKRRNKFYRSLRTASPTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKILLGIPA

Sequences:

>Translated_226_residues
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYI
KIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIK
YLNNLIEQDHRPVKRRNKFYRSLRTASPTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKILLGIPA
>Mature_226_residues
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYI
KIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIK
YLNNLIEQDHRPVKRRNKFYRSLRTASPTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKILLGIPA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 26993; Mature: 26993

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS50994 INTEGRASE ; PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQ
CCCCCCCCHHCCEEEEEEHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRL
HHHHCCCCCCEEEECCCEEEEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHH
VKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFY
HHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
RSLRTASPTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKILLGIPA
HHHHHCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHEEECCC
>Mature Secondary Structure
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYGKLLYQ
CCCCCCCCHHCCEEEEEEHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRL
HHHHCCCCCCEEEECCCEEEEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHH
VKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIKYLNNLIEQDHRPVKRRNKFY
HHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
RSLRTASPTIKGMEAIRGLYKKTRKEGTLFGFSVCTEIKILLGIPA
HHHHHCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2548057; 2365064 [H]