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The map label for this gene is yobQ [H]

Identifier: 125623801

GI number: 125623801

Start: 927365

End: 928525

Strand: Direct

Name: yobQ [H]

Synonym: llmg_0962

Alternate gene names: 125623801

Gene position: 927365-928525 (Clockwise)

Preceding gene: 125623799

Following gene: 125623802

Centisome position: 36.66

GC content: 29.2

Gene sequence:

>1161_bases
ATGAAAACAATAGAACAGCTCATGATAGATTCAGCAGATTTAATGTCAGATTTTATTCAATTGACAATTTTTATATTCCG
CAAGGAGGATTTTCAACTTTTTTATAGGAGTGATGAAGAAGAGCAAGCTTTTTCAAAAGAAATCATCGCTCATTTATCTC
AGTTGCCCTTGAAGGAAGAGGTGAATTTATTTTATATGCCTAAGATAAAAGGATATATTACTTATTTTTCTGTATTTGGT
AAAGAGGAGTATCTTCTACTTATTTTTAAAGGACAAGAAAAACTTGCAAATAATCCTTTCCCCGTTGAAGTAAAACAATT
ATTAAAAAGTGGTATTTTACTCTATCAAATGATTTTTCAAGAAAAATTAGATTATGAAGAATTATTTGAGAAAAATCAGC
ATATTATTTCTCCATTGCTTGCTGCTAAACCAATTGAAATGGAAATGATTCCAATACGTGAGGAAAGTAAATTCCATAAA
ACATATCTTTCTGAAAAATATTTGGGGGAATGTGTTATTCGTGGAGATGTTGCAGAGTTAAAAAAAGCTTTTTCAAATTA
TATGAATAAAGGAACTGCTGGAAAATTATCTAATAATTCAATGCGACATAAGAAAAACATTTTGATTTCAGTCATCACTA
TGACTACTCGTTCGGCTATACAGGGAGGATTACCTGAAGAAGAAGCTTTTTTGATGAGTGATTTATATATTCAAGAGCTT
GAAGAATTAACGGAATTAGAAGAAATTAGAACGCTTGCCTATAATGTGATGATCGATTTTGCAGATAAAGTGAAACAGCA
TCGATATTGTCAGGTTTCTTATAAAATATTATCTTGTCAAAAGTATATTGTTAATCATTTATACGAAAAACTAAGTGTGA
GTGAAATTGCAGAAGAGCTACACATGAATATTTCTTATTTATCTTCACAATTCAAAAAAGAGACAGGGCAAACAATTACA
AACTTTATTCAGGAGAAGCGAATAGAAGAAGCTAGAGAATTAATCCTTTTCTCAGACTATCCTTTTTCAAGAATTTATAC
CTTGTTAAATTTTACTGACCAAAGTCATTTTATAAAAATATTTAAAAAATATACTGGAATAACTCCCAAAAAGTTTCAAG
ATCAGTATATTTATCATGCCTCTACATCAATATATGATTGA

Upstream 100 bases:

>100_bases
ACCTCTTTCTCTAATTTGTTTTAGTATAGCAAAATCAAAAAATTAATTATGGTATGCATTATAGATATGTTGTATAATTT
TCACAAAAACGGAGAAAACT

Downstream 100 bases:

>100_bases
AATTAAAAAAAGACCTAGAATTTCAAAATTGATAAAATACATACCTAAAATATTAATTCTGTACTATTACGGGTGGAGTA
TCTACTGTATAATGAGGGTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKTIEQLMIDSADLMSDFIQLTIFIFRKEDFQLFYRSDEEEQAFSKEIIAHLSQLPLKEEVNLFYMPKIKGYITYFSVFG
KEEYLLLIFKGQEKLANNPFPVEVKQLLKSGILLYQMIFQEKLDYEELFEKNQHIISPLLAAKPIEMEMIPIREESKFHK
TYLSEKYLGECVIRGDVAELKKAFSNYMNKGTAGKLSNNSMRHKKNILISVITMTTRSAIQGGLPEEEAFLMSDLYIQEL
EELTELEEIRTLAYNVMIDFADKVKQHRYCQVSYKILSCQKYIVNHLYEKLSVSEIAEELHMNISYLSSQFKKETGQTIT
NFIQEKRIEEARELILFSDYPFSRIYTLLNFTDQSHFIKIFKKYTGITPKKFQDQYIYHASTSIYD

Sequences:

>Translated_386_residues
MKTIEQLMIDSADLMSDFIQLTIFIFRKEDFQLFYRSDEEEQAFSKEIIAHLSQLPLKEEVNLFYMPKIKGYITYFSVFG
KEEYLLLIFKGQEKLANNPFPVEVKQLLKSGILLYQMIFQEKLDYEELFEKNQHIISPLLAAKPIEMEMIPIREESKFHK
TYLSEKYLGECVIRGDVAELKKAFSNYMNKGTAGKLSNNSMRHKKNILISVITMTTRSAIQGGLPEEEAFLMSDLYIQEL
EELTELEEIRTLAYNVMIDFADKVKQHRYCQVSYKILSCQKYIVNHLYEKLSVSEIAEELHMNISYLSSQFKKETGQTIT
NFIQEKRIEEARELILFSDYPFSRIYTLLNFTDQSHFIKIFKKYTGITPKKFQDQYIYHASTSIYD
>Mature_386_residues
MKTIEQLMIDSADLMSDFIQLTIFIFRKEDFQLFYRSDEEEQAFSKEIIAHLSQLPLKEEVNLFYMPKIKGYITYFSVFG
KEEYLLLIFKGQEKLANNPFPVEVKQLLKSGILLYQMIFQEKLDYEELFEKNQHIISPLLAAKPIEMEMIPIREESKFHK
TYLSEKYLGECVIRGDVAELKKAFSNYMNKGTAGKLSNNSMRHKKNILISVITMTTRSAIQGGLPEEEAFLMSDLYIQEL
EELTELEEIRTLAYNVMIDFADKVKQHRYCQVSYKILSCQKYIVNHLYEKLSVSEIAEELHMNISYLSSQFKKETGQTIT
NFIQEKRIEEARELILFSDYPFSRIYTLLNFTDQSHFIKIFKKYTGITPKKFQDQYIYHASTSIYD

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 45519; Mature: 45519

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIEQLMIDSADLMSDFIQLTIFIFRKEDFQLFYRSDEEEQAFSKEIIAHLSQLPLKEE
CCCHHHHHCCCHHHHHHHHHHHHHEEECCCHHEEECCCCHHHHHHHHHHHHHHHCCCHHC
VNLFYMPKIKGYITYFSVFGKEEYLLLIFKGQEKLANNPFPVEVKQLLKSGILLYQMIFQ
CCEEEECCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EKLDYEELFEKNQHIISPLLAAKPIEMEMIPIREESKFHKTYLSEKYLGECVIRGDVAEL
HCCCHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
KKAFSNYMNKGTAGKLSNNSMRHKKNILISVITMTTRSAIQGGLPEEEAFLMSDLYIQEL
HHHHHHHHCCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EELTELEEIRTLAYNVMIDFADKVKQHRYCQVSYKILSCQKYIVNHLYEKLSVSEIAEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HMNISYLSSQFKKETGQTITNFIQEKRIEEARELILFSDYPFSRIYTLLNFTDQSHFIKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHCCCHHHHHHH
FKKYTGITPKKFQDQYIYHASTSIYD
HHHHCCCCCHHHCCCEEEECCCCCCC
>Mature Secondary Structure
MKTIEQLMIDSADLMSDFIQLTIFIFRKEDFQLFYRSDEEEQAFSKEIIAHLSQLPLKEE
CCCHHHHHCCCHHHHHHHHHHHHHEEECCCHHEEECCCCHHHHHHHHHHHHHHHCCCHHC
VNLFYMPKIKGYITYFSVFGKEEYLLLIFKGQEKLANNPFPVEVKQLLKSGILLYQMIFQ
CCEEEECCHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
EKLDYEELFEKNQHIISPLLAAKPIEMEMIPIREESKFHKTYLSEKYLGECVIRGDVAEL
HCCCHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
KKAFSNYMNKGTAGKLSNNSMRHKKNILISVITMTTRSAIQGGLPEEEAFLMSDLYIQEL
HHHHHHHHCCCCCCCCCCCCHHHHHHHHEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EELTELEEIRTLAYNVMIDFADKVKQHRYCQVSYKILSCQKYIVNHLYEKLSVSEIAEEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HMNISYLSSQFKKETGQTITNFIQEKRIEEARELILFSDYPFSRIYTLLNFTDQSHFIKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHCCCHHHHHHH
FKKYTGITPKKFQDQYIYHASTSIYD
HHHHCCCCCHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]