Click here to switch to the map view.

The map label for this gene is 125623720

Identifier: 125623720

GI number: 125623720

Start: 845351

End: 847063

Strand: Direct

Name: 125623720

Synonym: llmg_0876

Alternate gene names: NA

Gene position: 845351-847063 (Clockwise)

Preceding gene: 125623718

Following gene: 125623721

Centisome position: 33.42

GC content: 37.19

Gene sequence:

>1713_bases
ATGTCTAATATTAAAATCACCCCATTAGGTGGTGTACGTGAATTTGGTAAAAACATGTATTTGGTTGAAGTTGAAGAGCA
AATTTTTGTGCTTGATGCAGGGCTTAAATACGCTGAAATGGATCAACTTGGTGTTGATTTTGTTATTCCTGATATTACAT
ATCTCTTAGAAAATGCTGACCGCGTAGCTGGAATTTTCTTAACCCATGGGCACGCGGACTCTATTGGCGCTTTGCCTTAT
ATTGTTTCTGAATTAAAAGTTCCTGTATTTGGTTCAGAATTGACAATTGAACTTGCAAAAATTAATGTAAAAAATTATGC
TGACAGCCGTAAGTTTAATGATTTTCATGTTGTCACTGAAGATACAGAAATTGACTTTGGTAAAGCAGTGATTTCTTTCT
TCTCAACGACACATACGATTCCAGAAAGTTTAGGAATTGTCATCTCAACAACTGACGGGAACATTGTTTATACAGGTGAT
TTCCGTTTTGACCCAGCAGTTGCCAAAGGTTACCGTACAAATATGCGTCGCTTAGCGGAAATTGGAAATAGTGGCGTTCT
TGCCTTGCTTTCATCATCACCAAATGCTTTGTCAACAATGCAATCTGCCAGTGAACATGAAATTTATGAAAAAATTTATG
ACCACATTGATGACAATGAAGGTCGGGTCATTATTGCTTGTAATGCAGGTAACTTAGGACGAATTCAACAAACGATTGAT
GCAGCAATCAAGCTCGGTCGTCGTGTCGCCTTTACTGGTGAGGACATGGACCAAATTATTGAAACAGCAACTCGTCTTAA
TAAATTACAAATTGTTGATAAAAAATCAATCATTAAACCAGCTGAAATCAAAAAATTTGCTGATAATGAATTAGTTATTT
TAGAAACAGGACGAATGGGTGAGCCTCTCAAAGCATTGGGAGATATGGCTCATCGCCGTCATAAATACGTTAAAATTAAA
GATGGAGATTTAGTCCTTGCTGTGACAAGTCCATCTGTCTCTTATGAAACAACGATTGCTCGTATTGAAAATGAAATCTA
TAAAGCTGGTGGTGTCATGAAAATGTTGGCTTCAGATTTGAAAATATCTGGTCATGCTAATGCCCGCGACTTACAATTTC
TTCTTGATATCTTCCGTCCAAAAAACTTGATTCCAATCCAAGGTGAATACCGTGAACTTAGTGCTCATGCTGATTTAGCT
ATGGAAATGGATATTTTGCCAGAGCATATCTTTATTGCCAAACGCGGTGAAACCGTAAGTTTGGAAAATGGAGACATGGT
TCCTGCTGGAGTCATTCAAGCTGAAAATGTTATGATTGATGGTTCAGGAGTTGGAGATATCGGTTCAGTTGTTTTACGTG
ACCGTAAAGTCTTGTCAGAAGATGGAATTTTCATTGCGGTTATCACGATTTCTAAGACAGAACGCAAAATTGTCAGCAAA
TCTCGTGTTCATACTCGTGGTTTTGTTTATGTTAAAACATCGCGTGACTTGATGCGTGAAGCTGGTGAGTTAGTAAATGA
AACAGTTGACAAATATCTTGCAGGTAAAGAATTTGATTGGGCAGAAATTAAAGGTTCAATTCGTGATGCTCTTGGTAAAT
TCTTATATGAGCAAACAAAACGTAAACCGGTGATTCTTCCAGTCGTGATGGAAGCCCGTCAACCTCAAGATTTAAACAAA
CGTTACACCAAAAAAAATCATAATAAAAAATAA

Upstream 100 bases:

>100_bases
AAAAACAGGACTGTAAATTTACTGACAGAATTTGTCAATAACTTACAGATTCTTTTTATATCGAAAAAATTATAAATTAC
ACTGACAAGAAAGGTTTTTT

Downstream 100 bases:

>100_bases
AAGTTACAAAATCTCCTTTTTTTCGTATAGAAAGTTAGGAGGTTTTTTATGTCAAAAAAATCGATTAAGAAAATTACAAT
GACCGTTGGAGTAGGATTAC

Product: metallo-beta-lactamase superfamily protein

Products: NA

Alternate protein names: RNase J2 [H]

Number of amino acids: Translated: 570; Mature: 569

Protein sequence:

>570_residues
MSNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENADRVAGIFLTHGHADSIGALPY
IVSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTEDTEIDFGKAVISFFSTTHTIPESLGIVISTTDGNIVYTGD
FRFDPAVAKGYRTNMRRLAEIGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDHIDDNEGRVIIACNAGNLGRIQQTID
AAIKLGRRVAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKFADNELVILETGRMGEPLKALGDMAHRRHKYVKIK
DGDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDLKISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLA
MEMDILPEHIFIAKRGETVSLENGDMVPAGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSK
SRVHTRGFVYVKTSRDLMREAGELVNETVDKYLAGKEFDWAEIKGSIRDALGKFLYEQTKRKPVILPVVMEARQPQDLNK
RYTKKNHNKK

Sequences:

>Translated_570_residues
MSNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENADRVAGIFLTHGHADSIGALPY
IVSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTEDTEIDFGKAVISFFSTTHTIPESLGIVISTTDGNIVYTGD
FRFDPAVAKGYRTNMRRLAEIGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDHIDDNEGRVIIACNAGNLGRIQQTID
AAIKLGRRVAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKFADNELVILETGRMGEPLKALGDMAHRRHKYVKIK
DGDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDLKISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLA
MEMDILPEHIFIAKRGETVSLENGDMVPAGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSK
SRVHTRGFVYVKTSRDLMREAGELVNETVDKYLAGKEFDWAEIKGSIRDALGKFLYEQTKRKPVILPVVMEARQPQDLNK
RYTKKNHNKK
>Mature_569_residues
SNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENADRVAGIFLTHGHADSIGALPYI
VSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTEDTEIDFGKAVISFFSTTHTIPESLGIVISTTDGNIVYTGDF
RFDPAVAKGYRTNMRRLAEIGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDHIDDNEGRVIIACNAGNLGRIQQTIDA
AIKLGRRVAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKFADNELVILETGRMGEPLKALGDMAHRRHKYVKIKD
GDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDLKISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLAM
EMDILPEHIFIAKRGETVSLENGDMVPAGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSKS
RVHTRGFVYVKTSRDLMREAGELVNETVDKYLAGKEFDWAEIKGSIRDALGKFLYEQTKRKPVILPVVMEARQPQDLNKR
YTKKNHNKK

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 63409; Mature: 63278

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENAD
CCCEEEEECCCHHHHCCCEEEEEECCEEEEEECCCCCHHHHHCCCEEEHHHHHHHHCCCC
RVAGIFLTHGHADSIGALPYIVSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTE
CEEEEEEECCCCCCCCHHHHHHHHCCCCEECCCEEEEEEEEEEHHCCCCCCCCCEEEEEC
DTEIDFGKAVISFFSTTHTIPESLGIVISTTDGNIVYTGDFRFDPAVAKGYRTNMRRLAE
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCEECHHHHHHHHHHHHHHHH
IGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDHIDDNEGRVIIACNAGNLGRIQQTID
CCCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
AAIKLGRRVAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKFADNELVILETGRMG
HHHHHCCEEEECCCCHHHHHHHHHHHHHEEEECHHHCCCCHHHHHCCCCCEEEEECCCCC
EPLKALGDMAHRRHKYVKIKDGDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDL
CHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHC
KISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLAMEMDILPEHIFIAKRGETVS
EECCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEECCCCCEEEEEECCCEEE
LENGDMVPAGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSK
ECCCCCCCCCEEEECEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHH
SRVHTRGFVYVKTSRDLMREAGELVNETVDKYLAGKEFDWAEIKGSIRDALGKFLYEQTK
CCCEECEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
RKPVILPVVMEARQPQDLNKRYTKKNHNKK
CCCEEEEEEECCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENAD
CCEEEEECCCHHHHCCCEEEEEECCEEEEEECCCCCHHHHHCCCEEEHHHHHHHHCCCC
RVAGIFLTHGHADSIGALPYIVSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTE
CEEEEEEECCCCCCCCHHHHHHHHCCCCEECCCEEEEEEEEEEHHCCCCCCCCCEEEEEC
DTEIDFGKAVISFFSTTHTIPESLGIVISTTDGNIVYTGDFRFDPAVAKGYRTNMRRLAE
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCEECHHHHHHHHHHHHHHHH
IGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDHIDDNEGRVIIACNAGNLGRIQQTID
CCCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
AAIKLGRRVAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKFADNELVILETGRMG
HHHHHCCEEEECCCCHHHHHHHHHHHHHEEEECHHHCCCCHHHHHCCCCCEEEEECCCCC
EPLKALGDMAHRRHKYVKIKDGDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDL
CHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHC
KISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLAMEMDILPEHIFIAKRGETVS
EECCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEECCCCCEEEEEECCCEEE
LENGDMVPAGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSK
ECCCCCCCCCEEEECEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHH
SRVHTRGFVYVKTSRDLMREAGELVNETVDKYLAGKEFDWAEIKGSIRDALGKFLYEQTK
CCCEECEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
RKPVILPVVMEARQPQDLNKRYTKKNHNKK
CCCEEEEEEECCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA