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The map label for this gene is rbsD [H]

Identifier: 125623637

GI number: 125623637

Start: 775016

End: 775414

Strand: Direct

Name: rbsD [H]

Synonym: llmg_0786

Alternate gene names: 125623637

Gene position: 775016-775414 (Clockwise)

Preceding gene: 125623636

Following gene: 125623638

Centisome position: 30.64

GC content: 32.83

Gene sequence:

>399_bases
ATGAAAAAAGAAGGAATATTGAATAGTGAGCTTGCAAAAATCGCTGATGATTTGGGGCATACTGACCAAGTTTGTATTGG
AGATTTAGGCTTACCGGTACCATCAGGTGTCAAAAAAATTGATTTAGCACTGACACGTGGAAAACCTACTTTTCAAGAAG
TTTTGGATATTTATTTAGAAAATATTCTAGTTGAAAAGATTTATCTTGCTGACGAGATAAAAGAAAATAATCCTGAGCAG
CTAAAAATTTTACTGACAAAGCTGTCAGCAGATGTTGAAGTTGTTTTTGTCAGTCATGAGACCTTAAAATTAATGAATCA
TGATGTCAAAGCAGTTGTAAGAACAGGAGAAAATACACCTTATTCTAATATTATTTTACAATCAGGTGTTGCTTTGTGA

Upstream 100 bases:

>100_bases
TTTGGTGCTCAAGGTGGAATTCCAAGTCTAGCAGAAGTTGAAGATAAATTAAAAGAGCTTAATCTTAATTTTTATAAGGA
AAAGAAAGGACTTTGAATTT

Downstream 100 bases:

>100_bases
AAAAGGAGGAAGTCAATTTTGAAAATAGAAATGAAGAACATTTCTAAATCATTTGGAACCAACAAAGTTCTCGAAGCAAT
TGATTTAACTATCAATTCTG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPTFQEVLDIYLENILVEKIYLADEIKENNPEQ
LKILLTKLSADVEVVFVSHETLKLMNHDVKAVVRTGENTPYSNIILQSGVAL

Sequences:

>Translated_132_residues
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPTFQEVLDIYLENILVEKIYLADEIKENNPEQ
LKILLTKLSADVEVVFVSHETLKLMNHDVKAVVRTGENTPYSNIILQSGVAL
>Mature_132_residues
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPTFQEVLDIYLENILVEKIYLADEIKENNPEQ
LKILLTKLSADVEVVFVSHETLKLMNHDVKAVVRTGENTPYSNIILQSGVAL

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=39.568345323741, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 14550; Mature: 14550

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPTFQEVLDIYLE
CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
NILVEKIYLADEIKENNPEQLKILLTKLSADVEVVFVSHETLKLMNHDVKAVVRTGENTP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHEECCCCCC
YSNIILQSGVAL
HHHHHCCCCCCC
>Mature Secondary Structure
MKKEGILNSELAKIADDLGHTDQVCIGDLGLPVPSGVKKIDLALTRGKPTFQEVLDIYLE
CCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
NILVEKIYLADEIKENNPEQLKILLTKLSADVEVVFVSHETLKLMNHDVKAVVRTGENTP
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHEECCCCCC
YSNIILQSGVAL
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]