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The map label for this gene is xynB [H]

Identifier: 125623324

GI number: 125623324

Start: 452381

End: 453148

Strand: Reverse

Name: xynB [H]

Synonym: llmg_0457

Alternate gene names: 125623324

Gene position: 453148-452381 (Counterclockwise)

Preceding gene: 125623343

Following gene: 125623319

Centisome position: 17.91

GC content: 37.5

Gene sequence:

>768_bases
ATGAATAAATCAACGTTTTCTTTGAATGATACTGCTTGGTTTGATTTTTATCAACTTCAAAATCCACGTCCAGAAGAAAA
TTATACTTTTCCAGCCATCATTATTTGCCCCGGAGGTGGCTATCAACATATTTCCAACAGAGAATCTGACCCACTTGCGC
TTGCTTTTCTTGCACAGGGTTATCAAGTTTTTATTCTCAACTATACAGTGATGAACAAAGGAACTGATTATAATTTTCTC
TCTCAAAATATTACTGAAGTTCAGGCGGTTTTTGCTTTGATTAATCAACATCATGAACAATGGCAAATTAATCCCGAACA
TGTCTTTTTACTTGGCTGTTCAGCTGGAGGGCATTTAGCCGCTTGGTATGGCAATTCTGAACAAATTTATCGACCAAAGG
GTGTAATTCTTTGTTACCCTGTTACTTCCTTCACTTTTGGTTGGCCAAGTGATTTATCACATTTTAACTTTGAAATTGAA
AATATTTCAGAATACAATATTTCAGAAAAAGTGACTTCGGCTACACCCCCTACTTTCATCTGGCATACCGCTGATGATGC
AAGTGTTCCTATCTATAACAGTCTTAAATATTGTGACCGCCTGTCCAAACACCAAGTCCCATTTGAAGCTCATTTTTTTG
AAGCAGGACCACATGGCATTTCCTTGGCGAATCGGACAACAGCTCCTTCTGATGCTTATTGTCTTGATTCAGTTCATCGT
TGGTTCTCTTGGGCCTCAGATTGGTTAGAAAGACAAATAAAAAATTAA

Upstream 100 bases:

>100_bases
CTATGATATTTTTCTTAAACGAACTTAAAATATAGGAATGTATTAAATAAACATCGAGTCTGTTTCATATTTCTTTCATA
TTTTTTGGTACAATAAACCT

Downstream 100 bases:

>100_bases
AATGCCCACTCAACTGGGGCATTTTTTTTGACAAAATTTTGGTCGTTTTAAATAGAAACTATCCTTTTTCTTTTAACCAA
ACTTCTTTAAGAAAATCCAA

Product: lipase/esterase (putative)

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNKSTFSLNDTAWFDFYQLQNPRPEENYTFPAIIICPGGGYQHISNRESDPLALAFLAQGYQVFILNYTVMNKGTDYNFL
SQNITEVQAVFALINQHHEQWQINPEHVFLLGCSAGGHLAAWYGNSEQIYRPKGVILCYPVTSFTFGWPSDLSHFNFEIE
NISEYNISEKVTSATPPTFIWHTADDASVPIYNSLKYCDRLSKHQVPFEAHFFEAGPHGISLANRTTAPSDAYCLDSVHR
WFSWASDWLERQIKN

Sequences:

>Translated_255_residues
MNKSTFSLNDTAWFDFYQLQNPRPEENYTFPAIIICPGGGYQHISNRESDPLALAFLAQGYQVFILNYTVMNKGTDYNFL
SQNITEVQAVFALINQHHEQWQINPEHVFLLGCSAGGHLAAWYGNSEQIYRPKGVILCYPVTSFTFGWPSDLSHFNFEIE
NISEYNISEKVTSATPPTFIWHTADDASVPIYNSLKYCDRLSKHQVPFEAHFFEAGPHGISLANRTTAPSDAYCLDSVHR
WFSWASDWLERQIKN
>Mature_255_residues
MNKSTFSLNDTAWFDFYQLQNPRPEENYTFPAIIICPGGGYQHISNRESDPLALAFLAQGYQVFILNYTVMNKGTDYNFL
SQNITEVQAVFALINQHHEQWQINPEHVFLLGCSAGGHLAAWYGNSEQIYRPKGVILCYPVTSFTFGWPSDLSHFNFEIE
NISEYNISEKVTSATPPTFIWHTADDASVPIYNSLKYCDRLSKHQVPFEAHFFEAGPHGISLANRTTAPSDAYCLDSVHR
WFSWASDWLERQIKN

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 29193; Mature: 29193

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSTFSLNDTAWFDFYQLQNPRPEENYTFPAIIICPGGGYQHISNRESDPLALAFLAQG
CCCCEEECCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCEEEEEECCC
YQVFILNYTVMNKGTDYNFLSQNITEVQAVFALINQHHEQWQINPEHVFLLGCSAGGHLA
EEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCCCEEE
AWYGNSEQIYRPKGVILCYPVTSFTFGWPSDLSHFNFEIENISEYNISEKVTSATPPTFI
EEECCCCEEECCCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCEEE
WHTADDASVPIYNSLKYCDRLSKHQVPFEAHFFEAGPHGISLANRTTAPSDAYCLDSVHR
EECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHH
WFSWASDWLERQIKN
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKSTFSLNDTAWFDFYQLQNPRPEENYTFPAIIICPGGGYQHISNRESDPLALAFLAQG
CCCCEEECCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCEEEEEECCC
YQVFILNYTVMNKGTDYNFLSQNITEVQAVFALINQHHEQWQINPEHVFLLGCSAGGHLA
EEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECCCCEEE
AWYGNSEQIYRPKGVILCYPVTSFTFGWPSDLSHFNFEIENISEYNISEKVTSATPPTFI
EEECCCCEEECCCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCEEE
WHTADDASVPIYNSLKYCDRLSKHQVPFEAHFFEAGPHGISLANRTTAPSDAYCLDSVHR
EECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHH
WFSWASDWLERQIKN
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]