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The map label for this gene is yfhH [C]

Identifier: 125623306

GI number: 125623306

Start: 429250

End: 429978

Strand: Direct

Name: yfhH [C]

Synonym: llmg_0439

Alternate gene names: 125623306

Gene position: 429250-429978 (Clockwise)

Preceding gene: 125623305

Following gene: 125623307

Centisome position: 16.97

GC content: 34.84

Gene sequence:

>729_bases
ATGAGTTTTTTTGGAAATGTTGACTTTCAAAAATTAACCTATACAGAAAGGACTTGCTACAGTTATCTTCGCGATAATGT
TGATAAAATCCCTTATTTACGCGTCCGTGACATTGCTTTAGAGGCCCATGTTGGAACTTCAAGCGTCATGCGTTTAATAC
ATAAAATGGGTTATGATTCGTATACGGATTTTAAAGAATATATTATTGATAAAAAAGAGCTAGAAAAAGGAATTTCTAAC
ACTGCTATTCCTTTCTCATCAGATATTTTTTCAGGAGACGTTGAACAGCGTTTAGATAATTTAGCGCAACGTGTGATTGA
AAGTGATAATATCATTTTTACCGGAGTTGGCTCAAGTGGTTTAATCTGTGATTATGCAGCTAGAAGATTAGCTGGTGTGG
GCATTAATACTTTTTCATTTAGCGATGTAACTTATCCGATTGCTTCAAAATTGCAAAATACAACCAATACTTTAGTAATT
GCTTTATCCATTTCAGGTGAAACTAATGAAATCATTGAAGTACTGACGAGTCTTCGGTCAAATAAAGATGTTTATATTTC
GAGTATCACGCCCAAAATTAATTCGAGTATCGCTGAACTGAGCGATTTTGTCCTGACCTATCGAATCAATGAACACCGAA
TTAACACGCATTATGACTTAACGAGGCAATTACCTACGGTCTATTTGACAGAACGTTTAACAGATCTCGTTTATCAACGT
TCCAACTAA

Upstream 100 bases:

>100_bases
CAAATAATACAGCTCCTAGCTTATTAGAAAAGCAAGATTAAAAGTTGCGGAGACGCAACTTTTTTCTAACAAAAATCGTT
GAGTAAGAAAGGAGTAGAAA

Downstream 100 bases:

>100_bases
AAAAGCCAATCTGGCTTTTTTCTATGCTCTGTCGTTCCTAATGGTTTGATATCTAAAAGTAAAAAAGTTAAATTGAGATA
ACAAATATAATTATCAAGGC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYLRVRDIALEAHVGTSSVMRLIHKMGYDSYTDFKEYIIDKKELEKGISN
TAIPFSSDIFSGDVEQRLDNLAQRVIESDNIIFTGVGSSGLICDYAARRLAGVGINTFSFSDVTYPIASKLQNTTNTLVI
ALSISGETNEIIEVLTSLRSNKDVYISSITPKINSSIAELSDFVLTYRINEHRINTHYDLTRQLPTVYLTERLTDLVYQR
SN

Sequences:

>Translated_242_residues
MSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYLRVRDIALEAHVGTSSVMRLIHKMGYDSYTDFKEYIIDKKELEKGISN
TAIPFSSDIFSGDVEQRLDNLAQRVIESDNIIFTGVGSSGLICDYAARRLAGVGINTFSFSDVTYPIASKLQNTTNTLVI
ALSISGETNEIIEVLTSLRSNKDVYISSITPKINSSIAELSDFVLTYRINEHRINTHYDLTRQLPTVYLTERLTDLVYQR
SN
>Mature_241_residues
SFFGNVDFQKLTYTERTCYSYLRDNVDKIPYLRVRDIALEAHVGTSSVMRLIHKMGYDSYTDFKEYIIDKKELEKGISNT
AIPFSSDIFSGDVEQRLDNLAQRVIESDNIIFTGVGSSGLICDYAARRLAGVGINTFSFSDVTYPIASKLQNTTNTLVIA
LSISGETNEIIEVLTSLRSNKDVYISSITPKINSSIAELSDFVLTYRINEHRINTHYDLTRQLPTVYLTERLTDLVYQRS
N

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 27464; Mature: 27333

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00356 HTH_LACI_1 ; PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFGNVDFQKLTYTERTCYSYLRDNVDKIPYLRVRDIALEAHVGTSSVMRLIHKMGYDS
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCEEEEHEEEEECCCHHHHHHHHHHCCCCC
YTDFKEYIIDKKELEKGISNTAIPFSSDIFSGDVEQRLDNLAQRVIESDNIIFTGVGSSG
HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
LICDYAARRLAGVGINTFSFSDVTYPIASKLQNTTNTLVIALSISGETNEIIEVLTSLRS
CCHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC
NKDVYISSITPKINSSIAELSDFVLTYRINEHRINTHYDLTRQLPTVYLTERLTDLVYQR
CCCEEEEECCCHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHC
SN
CC
>Mature Secondary Structure 
SFFGNVDFQKLTYTERTCYSYLRDNVDKIPYLRVRDIALEAHVGTSSVMRLIHKMGYDS
CCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCEEEEHEEEEECCCHHHHHHHHHHCCCCC
YTDFKEYIIDKKELEKGISNTAIPFSSDIFSGDVEQRLDNLAQRVIESDNIIFTGVGSSG
HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
LICDYAARRLAGVGINTFSFSDVTYPIASKLQNTTNTLVIALSISGETNEIIEVLTSLRS
CCHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC
NKDVYISSITPKINSSIAELSDFVLTYRINEHRINTHYDLTRQLPTVYLTERLTDLVYQR
CCCEEEEECCCHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHHHHC
SN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]