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The map label for this gene is ytcD [H]

Identifier: 125623223

GI number: 125623223

Start: 340413

End: 340760

Strand: Direct

Name: ytcD [H]

Synonym: llmg_0353

Alternate gene names: 125623223

Gene position: 340413-340760 (Clockwise)

Preceding gene: 125623220

Following gene: 125623224

Centisome position: 13.46

GC content: 33.33

Gene sequence:

>348_bases
TTGAAAAAAATTTATAATATAGGTGTGGAAGCGACAATGGATGTTATTGGTGGAAAATGGAAACCAATTATTTTGTGTAA
TTTAAGACATAATCCAAGTCGTCCAGGAGAATTGAGAAGACTAATTCCAGGAATCAGCCAAAAAATGCTGACTCAGCAAT
TAAGAGAATTAGAAATTGATAATATTATCGTGCGTAAGGTTTATAATCAGGTCCCACCTAAGGTTGAATATTCACTAAGT
CCTTATGGGGAAACTTTAAATGGCTTACTAGATATTCTTTGTTCATGGGGCGAAGGCCATGTCCAAACTTTAAAAAGTAA
AGGTGAAGAAGTTCAAATTTTAGAATAA

Upstream 100 bases:

>100_bases
TATAATAAATAAAACCTCTTGAACAGTACCTACTTTTTTGTGTCATACGTACTAAAAAGTAATAATTGGATAGAATAAGG
GATTAGAAAGGAAATTAATT

Downstream 100 bases:

>100_bases
TCTAGTGAATAATGAGTAGCTGATAGGTAAGAGGAGTTAGGAAATGTATCAACCAAGATTCAACAAAATTCATCATATTG
CAATCATCGCCGACGATTAT

Product: putative transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKKIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRLIPGISQKMLTQQLRELEIDNIIVRKVYNQVPPKVEYSLS
PYGETLNGLLDILCSWGEGHVQTLKSKGEEVQILE

Sequences:

>Translated_115_residues
MKKIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRLIPGISQKMLTQQLRELEIDNIIVRKVYNQVPPKVEYSLS
PYGETLNGLLDILCSWGEGHVQTLKSKGEEVQILE
>Mature_115_residues
MKKIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRLIPGISQKMLTQQLRELEIDNIIVRKVYNQVPPKVEYSLS
PYGETLNGLLDILCSWGEGHVQTLKSKGEEVQILE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=83, Percent_Identity=43.3734939759036, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13082; Mature: 13082

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRLIPGISQKMLTQQLRELEID
CCCHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHH
NIIVRKVYNQVPPKVEYSLSPYGETLNGLLDILCSWGEGHVQTLKSKGEEVQILE
HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MKKIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRLIPGISQKMLTQQLRELEID
CCCHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHH
NIIVRKVYNQVPPKVEYSLSPYGETLNGLLDILCSWGEGHVQTLKSKGEEVQILE
HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]