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The map label for this gene is araJ [H]

Identifier: 125623221

GI number: 125623221

Start: 338265

End: 339440

Strand: Reverse

Name: araJ [H]

Synonym: llmg_0351

Alternate gene names: 125623221

Gene position: 339440-338265 (Counterclockwise)

Preceding gene: 125623222

Following gene: 125623205

Centisome position: 13.42

GC content: 38.01

Gene sequence:

>1176_bases
ATGAAAAAAATCTCTCCTAGTCTTACACTTCTTGCTTTAGCGATTAATGCTTTTGCAATTGGTTCAACCGAATTTATCAG
CGTTGGTTTAATGCCAATGATTGTGAACACTTTTAATATTAGTTTATCGCAAGCCGGTTTAACAGTCTCTCTTTATGCGC
TAGGTGTAACGGTTGGTGCACCATTACTAACTATTCTCACAGGAACTTGGAATCGAAAAACTTTGATGGTTGCCATTATG
ATTTTGTTTATCCTTGGTAATTTACTCTCAGCCTTTGCCCCAACTTTTATTTTACTTTTAGTTGGACGGGTGCTAGCTTC
ACTTGCCCATGGGATCTTCATGTCCATTTCCACAGTCATTGCCGCTGATGTTGTTCGTCCTGAAAAAAGAGCTTCAGCAA
TTGCCTTAATGTTTACAGGACTTACAGTTGCTACAGTTATCGGTGTTCCTTTGGGAACTTTCATTGGTCAACACTCTACT
TGGCACATGTCATTTATTTTCATTGTTGTCATTGGATTGATTGGGCTGATAGCTACAAGTATTCTTGTTCCTAAAGGTCT
TCCAATCCCTGGAAAAATCAACTTGAGTAGACTTGTAAGAATTTTCACGAATAAATCAATTATGATGTCCTTCTTTATCA
CTGCTTTTGGATATGGTGGAACTTTCGCTGCTTACACTTATCTTACCCCCATACTTGAAGGGACTTTTAGATTTTCAGCA
AGTACAGTCGTTATTATTTTAGTTGCCTATGGTGTGATGGTTGCCATTGGTAATTCACTAGGTGGACATCTAGCAAATAA
AAATATCCTTCCTGCTTTGCAAAAAATGTTTGCGGCTCTTGCCCTAAGCTTGCTCTTTCTTTTTATCAGTACAAGCTTAG
CTTCTCAACCTTTGGGATTGATTGCAACATTACTCTTGGGACTCTTTGCTTTTATGAATGTTCCTGGTTTACAATTATAT
GTTGTTCAACTGGCCGAAAAATTCACTCCAAAAGATATTACTCTGGTTTCTGCATTCAATATTGCAGCCTTTAACATTGG
AATTACTCTTGGTTCTTTTGTAGGAGGCCAAATTTCCAAAACCTCTAGTGTTGTCTTTACGCCTATCGGAGGAATTGTTA
TCATCTTGCTCGCAATGATTCTCATTGGCATAGCCCAAAAACAAAAAGCTCAGTAA

Upstream 100 bases:

>100_bases
TGCACTTGACCAAGAAGATATGGAGGCCCTAAACTCATTAAATGAAGCCCTTCGTGTTGGCCCTAACCCAGATACTTTTA
ATTTTTAAGAAAGAAATATA

Downstream 100 bases:

>100_bases
GAAGTTTTAGTAATCCTAAAAAAAATACTCTCTGATAAATGAATCAGAGAGTATTTTTATTTTAGAATTCATAGTTTTCA
AAATAAACTTCAAGGCTGCG

Product: putative arabinose efflux permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVAIM
ILFILGNLLSAFAPTFILLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHST
WHMSFIFIVVIGLIGLIATSILVPKGLPIPGKINLSRLVRIFTNKSIMMSFFITAFGYGGTFAAYTYLTPILEGTFRFSA
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISTSLASQPLGLIATLLLGLFAFMNVPGLQLY
VVQLAEKFTPKDITLVSAFNIAAFNIGITLGSFVGGQISKTSSVVFTPIGGIVIILLAMILIGIAQKQKAQ

Sequences:

>Translated_391_residues
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVAIM
ILFILGNLLSAFAPTFILLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHST
WHMSFIFIVVIGLIGLIATSILVPKGLPIPGKINLSRLVRIFTNKSIMMSFFITAFGYGGTFAAYTYLTPILEGTFRFSA
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISTSLASQPLGLIATLLLGLFAFMNVPGLQLY
VVQLAEKFTPKDITLVSAFNIAAFNIGITLGSFVGGQISKTSSVVFTPIGGIVIILLAMILIGIAQKQKAQ
>Mature_391_residues
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGAPLLTILTGTWNRKTLMVAIM
ILFILGNLLSAFAPTFILLLVGRVLASLAHGIFMSISTVIAADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHST
WHMSFIFIVVIGLIGLIATSILVPKGLPIPGKINLSRLVRIFTNKSIMMSFFITAFGYGGTFAAYTYLTPILEGTFRFSA
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISTSLASQPLGLIATLLLGLFAFMNVPGLQLY
VVQLAEKFTPKDITLVSAFNIAAFNIGITLGSFVGGQISKTSSVVFTPIGGIVIILLAMILIGIAQKQKAQ

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=384, Percent_Identity=36.1979166666667, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1786595, Length=361, Percent_Identity=27.4238227146814, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787808, Length=358, Percent_Identity=30.4469273743017, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI145693198, Length=267, Percent_Identity=26.9662921348315, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41274; Mature: 41274

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHH
PLLTILTGTWNRKTLMVAIMILFILGNLLSAFAPTFILLLVGRVLASLAHGIFMSISTVI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSTWHMSFIFIVVIGLIGLIATS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ILVPKGLPIPGKINLSRLVRIFTNKSIMMSFFITAFGYGGTFAAYTYLTPILEGTFRFSA
HHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISTSLASQPLGL
HHHHHHHHHHHHHHHHCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IATLLLGLFAFMNVPGLQLYVVQLAEKFTPKDITLVSAFNIAAFNIGITLGSFVGGQISK
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHHHHHHHCCCCCCC
TSSVVFTPIGGIVIILLAMILIGIAQKQKAQ
CCCEEEECHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKISPSLTLLALAINAFAIGSTEFISVGLMPMIVNTFNISLSQAGLTVSLYALGVTVGA
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCEEEHHHHHHHHHH
PLLTILTGTWNRKTLMVAIMILFILGNLLSAFAPTFILLLVGRVLASLAHGIFMSISTVI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AADVVRPEKRASAIALMFTGLTVATVIGVPLGTFIGQHSTWHMSFIFIVVIGLIGLIATS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
ILVPKGLPIPGKINLSRLVRIFTNKSIMMSFFITAFGYGGTFAAYTYLTPILEGTFRFSA
HHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH
STVVIILVAYGVMVAIGNSLGGHLANKNILPALQKMFAALALSLLFLFISTSLASQPLGL
HHHHHHHHHHHHHHHHCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IATLLLGLFAFMNVPGLQLYVVQLAEKFTPKDITLVSAFNIAAFNIGITLGSFVGGQISK
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCEEEEEEHHHHHHHCCCCCCC
TSSVVFTPIGGIVIILLAMILIGIAQKQKAQ
CCCEEEECHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]