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The map label for this gene is xynD [H]

Identifier: 125623165

GI number: 125623165

Start: 281791

End: 282912

Strand: Direct

Name: xynD [H]

Synonym: llmg_0293

Alternate gene names: 125623165

Gene position: 281791-282912 (Clockwise)

Preceding gene: 125623164

Following gene: 125623166

Centisome position: 11.14

GC content: 36.9

Gene sequence:

>1122_bases
ATGAGTCAAAAAAGAAGTGCAAGATCAAAGAGTTCAAAAAAGGCCTTTTGGAAACTGACGTTGATTATGGGAGCCCTGCT
GATTGTTGTCGCTGGAATCGGGACATATTATTACGATCAAGGAGTTCGTAAGCAGAATATTGCTTATGAAAAGCAGGTAA
ATGAAGCAAAAGAAGCCAAAGATAAAGCCTATAATTCCAGAAAAACAAGCGACATTAATGAAGCAAAAAAACTAATTGTT
AAGCTCCATGAGAAAGATAAAAGTAGTCTAAATCAATCAATTACTCAACTTTTGGCATATTTGGCAGATATTGATAAAGT
GAGTCAACTGGTTGCTAAAGAGCATCAAAATATCACCGAAGATACGATAAAAGAAGCAGAGCAAGGTCTTGAACTTTTAA
ATGCTTCTTATGAAAAAACAGATAAAGAAAAATTTGCTCAACAAATCGCCGCTGATAAGCAAATTCTTGTTGAACGACAA
AAAGAGGCTGAACGAATTGCTGATGAAAAAAATAAATTAGCAAATCAAAAATTGATTGCTTTGACTTTTGATGATGGTCC
AAACCCGACCACCACTCCTCAGTTACTAAAAACACTGAGTGCTGCAAAAGTTCCCGCTACTTTCTTTGCGTTGGGGAGTG
AAGCACAGCAATATCCCGATATTATTAAAGAGGAATCTGACTTAGGAAATGAAGTCGCTTCACATACTTGGGATCATAAA
GATTTGGTGACCTTGTCACCAGCTCAACAAAAACAAGAAATTGAAAGTGCCAATCAATTAATCAATAAGATTACAGGGAA
AAATGTCACGCTCTTTAGACCACCATTCGGAAGTTACAATAATTCTGTATTGTGCCAAACTGATTTAACAGCAGTCAATT
GGTCAGTGGATACTAATGACTGGCGTTATCGTACAAGCGCACCGGTCGTTCAAAATGTAGCGACTTATGCTCATGATGGT
GCGATTATTTTGATGCATGATATTCATCAGTGGTCAGTAGATGCCGTACCACAAATTATTCAAAATTTGAAAGCACAAGG
ATATACTTTTGTGACTGTCAGTACTTTATTGGATATTCGAAATGGGGGCGCAAAAGCACAACAAGTGTATTTTGGCAGAT
AA

Upstream 100 bases:

>100_bases
TATGTTATTATAGAAAGATAGAAGTTAAAATAACATTTTTGTATTAATGGTGTTACAAAGAGAACTTTTTTGAAATATAT
AGGAGTTTTTAAGAAGAAAA

Downstream 100 bases:

>100_bases
ATTGATAGAGGAATAGTATTTTATCTATTCCTTTTTTTGCTGACAAAAACCTAATTTATTTTAAATTTTTGCATGTAATG
AGTTTATTCTTGACAACTTT

Product: endo-1,4-beta-xylanase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSQKRSARSKSSKKAFWKLTLIMGALLIVVAGIGTYYYDQGVRKQNIAYEKQVNEAKEAKDKAYNSRKTSDINEAKKLIV
KLHEKDKSSLNQSITQLLAYLADIDKVSQLVAKEHQNITEDTIKEAEQGLELLNASYEKTDKEKFAQQIAADKQILVERQ
KEAERIADEKNKLANQKLIALTFDDGPNPTTTPQLLKTLSAAKVPATFFALGSEAQQYPDIIKEESDLGNEVASHTWDHK
DLVTLSPAQQKQEIESANQLINKITGKNVTLFRPPFGSYNNSVLCQTDLTAVNWSVDTNDWRYRTSAPVVQNVATYAHDG
AIILMHDIHQWSVDAVPQIIQNLKAQGYTFVTVSTLLDIRNGGAKAQQVYFGR

Sequences:

>Translated_373_residues
MSQKRSARSKSSKKAFWKLTLIMGALLIVVAGIGTYYYDQGVRKQNIAYEKQVNEAKEAKDKAYNSRKTSDINEAKKLIV
KLHEKDKSSLNQSITQLLAYLADIDKVSQLVAKEHQNITEDTIKEAEQGLELLNASYEKTDKEKFAQQIAADKQILVERQ
KEAERIADEKNKLANQKLIALTFDDGPNPTTTPQLLKTLSAAKVPATFFALGSEAQQYPDIIKEESDLGNEVASHTWDHK
DLVTLSPAQQKQEIESANQLINKITGKNVTLFRPPFGSYNNSVLCQTDLTAVNWSVDTNDWRYRTSAPVVQNVATYAHDG
AIILMHDIHQWSVDAVPQIIQNLKAQGYTFVTVSTLLDIRNGGAKAQQVYFGR
>Mature_372_residues
SQKRSARSKSSKKAFWKLTLIMGALLIVVAGIGTYYYDQGVRKQNIAYEKQVNEAKEAKDKAYNSRKTSDINEAKKLIVK
LHEKDKSSLNQSITQLLAYLADIDKVSQLVAKEHQNITEDTIKEAEQGLELLNASYEKTDKEKFAQQIAADKQILVERQK
EAERIADEKNKLANQKLIALTFDDGPNPTTTPQLLKTLSAAKVPATFFALGSEAQQYPDIIKEESDLGNEVASHTWDHKD
LVTLSPAQQKQEIESANQLINKITGKNVTLFRPPFGSYNNSVLCQTDLTAVNWSVDTNDWRYRTSAPVVQNVATYAHDGA
IILMHDIHQWSVDAVPQIIQNLKAQGYTFVTVSTLLDIRNGGAKAQQVYFGR

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=157, Percent_Identity=36.3057324840764, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6323339, Length=168, Percent_Identity=35.1190476190476, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021729
- InterPro:   IPR011330
- InterPro:   IPR017219
- InterPro:   IPR002509 [H]

Pfam domain/function: PF11738 DUF3298; PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 41773; Mature: 41641

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKRSARSKSSKKAFWKLTLIMGALLIVVAGIGTYYYDQGVRKQNIAYEKQVNEAKEAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
DKAYNSRKTSDINEAKKLIVKLHEKDKSSLNQSITQLLAYLADIDKVSQLVAKEHQNITE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DTIKEAEQGLELLNASYEKTDKEKFAQQIAADKQILVERQKEAERIADEKNKLANQKLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LTFDDGPNPTTTPQLLKTLSAAKVPATFFALGSEAQQYPDIIKEESDLGNEVASHTWDHK
EEECCCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DLVTLSPAQQKQEIESANQLINKITGKNVTLFRPPFGSYNNSVLCQTDLTAVNWSVDTND
CEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCEEEEEEECCCC
WRYRTSAPVVQNVATYAHDGAIILMHDIHQWSVDAVPQIIQNLKAQGYTFVTVSTLLDIR
CEEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHH
NGGAKAQQVYFGR
CCCCCHHHCCCCC
>Mature Secondary Structure 
SQKRSARSKSSKKAFWKLTLIMGALLIVVAGIGTYYYDQGVRKQNIAYEKQVNEAKEAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
DKAYNSRKTSDINEAKKLIVKLHEKDKSSLNQSITQLLAYLADIDKVSQLVAKEHQNITE
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
DTIKEAEQGLELLNASYEKTDKEKFAQQIAADKQILVERQKEAERIADEKNKLANQKLIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
LTFDDGPNPTTTPQLLKTLSAAKVPATFFALGSEAQQYPDIIKEESDLGNEVASHTWDHK
EEECCCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DLVTLSPAQQKQEIESANQLINKITGKNVTLFRPPFGSYNNSVLCQTDLTAVNWSVDTND
CEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCEEEEEEECCCC
WRYRTSAPVVQNVATYAHDGAIILMHDIHQWSVDAVPQIIQNLKAQGYTFVTVSTLLDIR
CEEECCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHH
NGGAKAQQVYFGR
CCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]