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The map label for this gene is rgpC [H]

Identifier: 125623090

GI number: 125623090

Start: 201655

End: 202464

Strand: Direct

Name: rgpC [H]

Synonym: llmg_0213

Alternate gene names: 125623090

Gene position: 201655-202464 (Clockwise)

Preceding gene: 125623089

Following gene: 125623091

Centisome position: 7.97

GC content: 35.93

Gene sequence:

>810_bases
ATGAATTTCTTCAGCCGTAGAAATCAAATTCTACTTAAAGAGTTAATTAAAACTGACTTTAAACTTCGTTACCAAGGAAG
TGTTATAGGTTACTTATGGTCTATCCTCAAACCTATCTTGCTCTTCTTAATTCTCTATCTCGTCTTTGTACGATTTATGC
GTTTTGGGGAAGCAATCCCTCACTTTGCAGTCGCCCTCTTACTCGGGATTACAATCTGGAACTTTTTCAGTGAAGCAACA
AACATGGGGATGCTCTCAATTGTTAGTCGCGGGGACTTGTTACGAAAAGTCAACTTTTCTAAACCCGTACTTATCTTTTC
TGTTGTGGCCAATGCATTCATTAATTTGATGATTTCTTTAGTTGTTGTTATTATCTTTGCCCTCATCAATGGCGTGCACA
TGAGTTGGACTGTAATTTTTGCAGTGCCTCTCCTTTTTGAGTTAACCCTCTTTACAATGGGAATTGCTTTTATTCTTTCA
ACACTATTTGTTTATTTCCGTGACTTAGGTCCAATCTGGGAAGTAGTGATGCAAGCAGCATTCTATGGAACGCCAATCAT
CTATCCAGTAACACAAATCTCAACTTCACATCTTGAAATTGCTAAAATATTGATGCTTAATCCAATGGCTCAAATTGTTC
AAGATATGCGCTATATTTTGACTTTTAGTAACAATGCCAATCCAACGCTATGGCAAATGTGGGATAATCCTTTTGTAATT
ATTATTCCTTATATCCTTCCTGTTCTTGTTTTTGGATTAGGACTTTGGATATTTACTAAAAACTCTAAGAAGTTTGCAGA
AGTTATTTAA

Upstream 100 bases:

>100_bases
AGATTCTTGACCGATATGATTTGCGTAAAAACAAAAACTATCATACAAGTATTTTTCGTACACTTATCATCACAAAATTT
GCATACAAAGGAAAAAACAA

Downstream 100 bases:

>100_bases
TTTAAGGAGATAAAATGGCTGAACTAGCAGTAAAAATTGATCATGTAAGTAAGTATTTTCGTCTTCCAACGGAAGCGAGT
ACAAGCCTTCGGACAACTCT

Product: capsule polysaccharide export inner-membrane protein RgpC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNFFSRRNQILLKELIKTDFKLRYQGSVIGYLWSILKPILLFLILYLVFVRFMRFGEAIPHFAVALLLGITIWNFFSEAT
NMGMLSIVSRGDLLRKVNFSKPVLIFSVVANAFINLMISLVVVIIFALINGVHMSWTVIFAVPLLFELTLFTMGIAFILS
TLFVYFRDLGPIWEVVMQAAFYGTPIIYPVTQISTSHLEIAKILMLNPMAQIVQDMRYILTFSNNANPTLWQMWDNPFVI
IIPYILPVLVFGLGLWIFTKNSKKFAEVI

Sequences:

>Translated_269_residues
MNFFSRRNQILLKELIKTDFKLRYQGSVIGYLWSILKPILLFLILYLVFVRFMRFGEAIPHFAVALLLGITIWNFFSEAT
NMGMLSIVSRGDLLRKVNFSKPVLIFSVVANAFINLMISLVVVIIFALINGVHMSWTVIFAVPLLFELTLFTMGIAFILS
TLFVYFRDLGPIWEVVMQAAFYGTPIIYPVTQISTSHLEIAKILMLNPMAQIVQDMRYILTFSNNANPTLWQMWDNPFVI
IIPYILPVLVFGLGLWIFTKNSKKFAEVI
>Mature_269_residues
MNFFSRRNQILLKELIKTDFKLRYQGSVIGYLWSILKPILLFLILYLVFVRFMRFGEAIPHFAVALLLGITIWNFFSEAT
NMGMLSIVSRGDLLRKVNFSKPVLIFSVVANAFINLMISLVVVIIFALINGVHMSWTVIFAVPLLFELTLFTMGIAFILS
TLFVYFRDLGPIWEVVMQAAFYGTPIIYPVTQISTSHLEIAKILMLNPMAQIVQDMRYILTFSNNANPTLWQMWDNPFVI
IIPYILPVLVFGLGLWIFTKNSKKFAEVI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30938; Mature: 30938

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFFSRRNQILLKELIKTDFKLRYQGSVIGYLWSILKPILLFLILYLVFVRFMRFGEAIP
CCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFAVALLLGITIWNFFSEATNMGMLSIVSRGDLLRKVNFSKPVLIFSVVANAFINLMISL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
VVVIIFALINGVHMSWTVIFAVPLLFELTLFTMGIAFILSTLFVYFRDLGPIWEVVMQAA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FYGTPIIYPVTQISTSHLEIAKILMLNPMAQIVQDMRYILTFSNNANPTLWQMWDNPFVI
HHCCCCEEEHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEE
IIPYILPVLVFGLGLWIFTKNSKKFAEVI
EHHHHHHHHHHHHHHHHEECCCHHHHHCC
>Mature Secondary Structure
MNFFSRRNQILLKELIKTDFKLRYQGSVIGYLWSILKPILLFLILYLVFVRFMRFGEAIP
CCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFAVALLLGITIWNFFSEATNMGMLSIVSRGDLLRKVNFSKPVLIFSVVANAFINLMISL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
VVVIIFALINGVHMSWTVIFAVPLLFELTLFTMGIAFILSTLFVYFRDLGPIWEVVMQAA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FYGTPIIYPVTQISTSHLEIAKILMLNPMAQIVQDMRYILTFSNNANPTLWQMWDNPFVI
HHCCCCEEEHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEE
IIPYILPVLVFGLGLWIFTKNSKKFAEVI
EHHHHHHHHHHHHHHHHEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]