BacMap

Definition	Lactococcus lactis subsp. cremoris MG1363, complete genome.
Accession	NC_009004
Length	2,529,478

Click here to switch to the map view.

The map label for this gene is rgpD [H]

Identifier: 125623091

GI number: 125623091

Start: 202479

End: 203672

Strand: Direct

Name: rgpD [H]

Synonym: llmg_0214

Alternate gene names: 125623091

Gene position: 202479-203672 (Clockwise)

Preceding gene: 125623090

Following gene: 125623092

Centisome position: 8.0

GC content: 36.01

Gene sequence:

>1194_bases
ATGGCTGAACTAGCAGTAAAAATTGATCATGTAAGTAAGTATTTTCGTCTTCCAACGGAAGCGAGTACAAGCCTTCGGAC
AACTCTTGTCAACAGATTTAGAGGAATCAAAGGTTATAAAGAACAACATGTCTTAAAAGATATTGATTTTGAAGTAGAAA
AAGGTGATTTTTTTGGAATTGTTGGACGTAACGGTTCAGGAAAATCAACACTTTTAAAAATCATTTCGCAAATTTATGTT
CCAGAAAAAGGAACAGTGACCGTAAATGGTAAATTGGTTTCGTTCATTGAGCTTGGCGTTGGTTTCAATCCTGAGCTTAC
AGGACGTGAAAATGTCTATATGAACGGTGCAATGCTTGGGTTTTCAACTCAAGAAATTGATGAAATGTATGATGAAATCG
TTGATTTTGCAGAACTACATGAATTCATGAACCAAAAGCTCAAAAACTATTCTAGTGGGATGCAAGTTCGTTTAGCATTC
TCTGTTGCCATTAAAGCCAGAGGAGATGTGCTCGTTTTGGACGAGGTTTTGGCAGTTGGTGATGAGGCTTTCCAAAGGAA
ATGTAATGATTATTTCTTGGAAAGAAAAAAATCAGGTCTGACAACTATCTTGGTTACTCATGATATGAATGCCGTAAAAA
AATATTGTAACAAAGCGGTACTTATTGAAGACGGTTTGATTAAAGTCTCAGGAAATGTAGATAAAGTTGCTAACCAATAC
AGTCTGGATAACTTAAAACGACTTAAAGCAGCACAAGAAGATAGCAGTGAAGAAGTAGAAGAATTTGTCAGCGATTTGAA
AGTGAATTTACTTTCACCTGTACAAACAACTCCGGAACAAAGTGTTAAATTTGAAATTTCTTATACTGTAAAACAAGACA
TTCAAACCTATGTTGCCTTTTCTCTGACAGATGCAGACCGTAATATTTGGATTTACAATGATAACTCGATGGATTACCTC
ACCGAAGGACAAGGTGAAAAACGAGCTGTTTACGAATGCAAACTCGACCAAGTTAATAATTTAAAGCTCAAGCTACAAGT
TTCTGTGCGGAATGCAAAAGATGAAATGGTTGCTTATGACACCGATGAAAAAATCATCATTATTAATCGCCTTGACATTC
CAAAAGATGACCTCAGTGCTAAAGATTCAGCAAGTGGCTTACTCTTGAGGAATGGAGATTGGAATTTTGGTTAA

Upstream 100 bases:

>100_bases
TTCCTTATATCCTTCCTGTTCTTGTTTTTGGATTAGGACTTTGGATATTTACTAAAAACTCTAAGAAGTTTGCAGAAGTT
ATTTAATTTAAGGAGATAAA

Downstream 100 bases:

>100_bases
AGAAAATAATCAAACAAAGAAATTAATCAAACCAGAACGTCTTTTTTTAATGATTGCTCTTGTTGCTGGTTTAATTTTTA
CAGTTGCTCAACCACTCTTT

Product: polysaccharide ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MAELAVKIDHVSKYFRLPTEASTSLRTTLVNRFRGIKGYKEQHVLKDIDFEVEKGDFFGIVGRNGSGKSTLLKIISQIYV
PEKGTVTVNGKLVSFIELGVGFNPELTGRENVYMNGAMLGFSTQEIDEMYDEIVDFAELHEFMNQKLKNYSSGMQVRLAF
SVAIKARGDVLVLDEVLAVGDEAFQRKCNDYFLERKKSGLTTILVTHDMNAVKKYCNKAVLIEDGLIKVSGNVDKVANQY
SLDNLKRLKAAQEDSSEEVEEFVSDLKVNLLSPVQTTPEQSVKFEISYTVKQDIQTYVAFSLTDADRNIWIYNDNSMDYL
TEGQGEKRAVYECKLDQVNNLKLKLQVSVRNAKDEMVAYDTDEKIIIINRLDIPKDDLSAKDSASGLLLRNGDWNFG

Sequences:

>Translated_397_residues
MAELAVKIDHVSKYFRLPTEASTSLRTTLVNRFRGIKGYKEQHVLKDIDFEVEKGDFFGIVGRNGSGKSTLLKIISQIYV
PEKGTVTVNGKLVSFIELGVGFNPELTGRENVYMNGAMLGFSTQEIDEMYDEIVDFAELHEFMNQKLKNYSSGMQVRLAF
SVAIKARGDVLVLDEVLAVGDEAFQRKCNDYFLERKKSGLTTILVTHDMNAVKKYCNKAVLIEDGLIKVSGNVDKVANQY
SLDNLKRLKAAQEDSSEEVEEFVSDLKVNLLSPVQTTPEQSVKFEISYTVKQDIQTYVAFSLTDADRNIWIYNDNSMDYL
TEGQGEKRAVYECKLDQVNNLKLKLQVSVRNAKDEMVAYDTDEKIIIINRLDIPKDDLSAKDSASGLLLRNGDWNFG
>Mature_396_residues
AELAVKIDHVSKYFRLPTEASTSLRTTLVNRFRGIKGYKEQHVLKDIDFEVEKGDFFGIVGRNGSGKSTLLKIISQIYVP
EKGTVTVNGKLVSFIELGVGFNPELTGRENVYMNGAMLGFSTQEIDEMYDEIVDFAELHEFMNQKLKNYSSGMQVRLAFS
VAIKARGDVLVLDEVLAVGDEAFQRKCNDYFLERKKSGLTTILVTHDMNAVKKYCNKAVLIEDGLIKVSGNVDKVANQYS
LDNLKRLKAAQEDSSEEVEEFVSDLKVNLLSPVQTTPEQSVKFEISYTVKQDIQTYVAFSLTDADRNIWIYNDNSMDYLT
EGQGEKRAVYECKLDQVNNLKLKLQVSVRNAKDEMVAYDTDEKIIIINRLDIPKDDLSAKDSASGLLLRNGDWNFG

Specific function: Influences the expression of the surface array protein gene (vapA). May have both regulatory and transport activities [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=304, Percent_Identity=24.0131578947368, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI153792144, Length=237, Percent_Identity=23.6286919831224, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI31657092, Length=211, Percent_Identity=23.2227488151659, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI27436953, Length=219, Percent_Identity=24.6575342465753, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=23, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI6005701, Length=241, Percent_Identity=21.9917012448133, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI30795238, Length=228, Percent_Identity=21.4912280701754, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27881501, Length=228, Percent_Identity=21.4912280701754, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27477115, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI27262624, Length=211, Percent_Identity=24.1706161137441, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI27262626, Length=211, Percent_Identity=24.1706161137441, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI45446740, Length=222, Percent_Identity=22.0720720720721, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI47078218, Length=222, Percent_Identity=22.0720720720721, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI21536376, Length=212, Percent_Identity=22.6415094339623, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI150417984, Length=216, Percent_Identity=25.462962962963, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1786398, Length=205, Percent_Identity=24.8780487804878, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=22.5, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790525, Length=247, Percent_Identity=25.1012145748988, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787370, Length=206, Percent_Identity=24.2718446601942, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1790467, Length=271, Percent_Identity=25.830258302583, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787029, Length=212, Percent_Identity=27.3584905660377, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786319, Length=194, Percent_Identity=27.319587628866, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=23.4741784037559, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789032, Length=219, Percent_Identity=20.5479452054795, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788225, Length=213, Percent_Identity=26.2910798122066, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=25.2293577981651, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789672, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=23.3644859813084, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788450, Length=213, Percent_Identity=24.8826291079812, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=22.5941422594142, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87081782, Length=207, Percent_Identity=23.6714975845411, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788210, Length=139, Percent_Identity=30.9352517985612, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787792, Length=215, Percent_Identity=24.1860465116279, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789751, Length=219, Percent_Identity=24.6575342465753, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786803, Length=242, Percent_Identity=22.3140495867769, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=21.3953488372093, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788897, Length=215, Percent_Identity=21.8604651162791, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=26.6009852216749, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=238, Percent_Identity=23.9495798319328, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=24.537037037037, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=266, Percent_Identity=21.8045112781955, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17565938, Length=209, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=207, Percent_Identity=27.536231884058, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=25.3521126760563, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=259, Percent_Identity=21.2355212355212, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=259, Percent_Identity=21.2355212355212, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=259, Percent_Identity=21.2355212355212, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=217, Percent_Identity=26.2672811059908, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17533971, Length=234, Percent_Identity=26.4957264957265, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17556528, Length=241, Percent_Identity=28.2157676348548, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=27.0142180094787, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=260, Percent_Identity=24.6153846153846, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321720, Length=231, Percent_Identity=25.5411255411255, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322640, Length=213, Percent_Identity=26.2910798122066, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323014, Length=231, Percent_Identity=26.8398268398268, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=24.2990654205607, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24666092, Length=296, Percent_Identity=23.9864864864865, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007184, Length=208, Percent_Identity=21.1538461538462, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221500365, Length=208, Percent_Identity=21.1538461538462, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24650853, Length=204, Percent_Identity=26.9607843137255, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650855, Length=204, Percent_Identity=26.9607843137255, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281362751, Length=204, Percent_Identity=26.9607843137255, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28573571, Length=210, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24582014, Length=197, Percent_Identity=26.9035532994924, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582012, Length=197, Percent_Identity=26.9035532994924, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643674, Length=220, Percent_Identity=22.2727272727273, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648314, Length=220, Percent_Identity=24.0909090909091, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=201, Percent_Identity=24.8756218905473, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85725262, Length=216, Percent_Identity=25, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 44779; Mature: 44648

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELAVKIDHVSKYFRLPTEASTSLRTTLVNRFRGIKGYKEQHVLKDIDFEVEKGDFFGI
CCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCCEEEE
VGRNGSGKSTLLKIISQIYVPEKGTVTVNGKLVSFIELGVGFNPELTGRENVYMNGAMLG
EECCCCCHHHHHHHHHHHCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCEEECCEEEC
FSTQEIDEMYDEIVDFAELHEFMNQKLKNYSSGMQVRLAFSVAIKARGDVLVLDEVLAVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEHHHHHCC
DEAFQRKCNDYFLERKKSGLTTILVTHDMNAVKKYCNKAVLIEDGLIKVSGNVDKVANQY
CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCEEEEECCEEEECCCHHHHHHHH
SLDNLKRLKAAQEDSSEEVEEFVSDLKVNLLSPVQTTPEQSVKFEISYTVKQDIQTYVAF
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEHHHHHEEEEE
SLTDADRNIWIYNDNSMDYLTEGQGEKRAVYECKLDQVNNLKLKLQVSVRNAKDEMVAYD
EEEECCCEEEEEECCCCCEEECCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEC
TDEKIIIINRLDIPKDDLSAKDSASGLLLRNGDWNFG
CCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
AELAVKIDHVSKYFRLPTEASTSLRTTLVNRFRGIKGYKEQHVLKDIDFEVEKGDFFGI
CCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCCEEEE
VGRNGSGKSTLLKIISQIYVPEKGTVTVNGKLVSFIELGVGFNPELTGRENVYMNGAMLG
EECCCCCHHHHHHHHHHHCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCEEECCEEEC
FSTQEIDEMYDEIVDFAELHEFMNQKLKNYSSGMQVRLAFSVAIKARGDVLVLDEVLAVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEHHHHHCC
DEAFQRKCNDYFLERKKSGLTTILVTHDMNAVKKYCNKAVLIEDGLIKVSGNVDKVANQY
CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCEEEEECCEEEECCCHHHHHHHH
SLDNLKRLKAAQEDSSEEVEEFVSDLKVNLLSPVQTTPEQSVKFEISYTVKQDIQTYVAF
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEHHHHHEEEEE
SLTDADRNIWIYNDNSMDYLTEGQGEKRAVYECKLDQVNNLKLKLQVSVRNAKDEMVAYD
EEEECCCEEEEEECCCCCEEECCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEC
TDEKIIIINRLDIPKDDLSAKDSASGLLLRNGDWNFG
CCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8491726 [H]