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The map label for this gene is yobS [H]

Identifier: 125623020

GI number: 125623020

Start: 138054

End: 138629

Strand: Direct

Name: yobS [H]

Synonym: llmg_0141

Alternate gene names: 125623020

Gene position: 138054-138629 (Clockwise)

Preceding gene: 125623018

Following gene: 125623021

Centisome position: 5.46

GC content: 33.16

Gene sequence:

>576_bases
ATGGCAAGGATTGCATTAACCCGCGATAAAATTGTTCAAGCGACAATCAAGTTAGCTAGTGAAATTGGACTCTCTAATGT
GAGTTTCCCTCGTTTAGCAGAATATTTTGGAATTAAAGCTCCGTCACTTTACAATCATTTTAAAAATATGGAAGAAGTTC
GAGTAGCGACTGCAGTTTACTTACAAAAAGAACTAAATCATGAATTGACTCATGCAATGGTAGGCTTGACGCCTTTAGCC
GCTCTTAGAGCTTATGCTGAAAGCTATAAAAAATTTGCCGAAAAATATGAAGCAGTTTATGAATTAATTAATGTGATACA
TCAGACAAATAATGGTGAACTTGAATATTTAGCAAAGGAAAATATTCGCTTGGTTCGTCGTAGTTTAGAAAATTTTAATT
TATCAGAAGAAGAGAATTTTCATATTAGTCGAATGTTTAGGTCAACTTTGCATGGATTTATTACTTTGACGCAATTAGGT
TATTTTCGTCAGTCAGGCTCAATTTCTAAAGAAGAGTCGTTTACTTATATGGTAGATCATCTGCTTAGTACGCTTAATGA
TAAACATAGTATTTAA

Upstream 100 bases:

>100_bases
AGAGTGAATAGTTTTATACTGAAATAAGATGCTTTGAGATGAAAAAATCTCAAACTTCAAGAAAACTTTCTAATCAGAAA
GTACTGAAAGGAATCCTATT

Downstream 100 bases:

>100_bases
GAGAATAAAATATTCCTATCAAACAAAGTTAGGATAACAAACAAAAAGGAGTTATGGAATATTTTGAATAAAAGAACGTT
TTCATTTGAAATAGTGACTT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MARIALTRDKIVQATIKLASEIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNHELTHAMVGLTPLA
ALRAYAESYKKFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLENFNLSEEENFHISRMFRSTLHGFITLTQLG
YFRQSGSISKEESFTYMVDHLLSTLNDKHSI

Sequences:

>Translated_191_residues
MARIALTRDKIVQATIKLASEIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNHELTHAMVGLTPLA
ALRAYAESYKKFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLENFNLSEEENFHISRMFRSTLHGFITLTQLG
YFRQSGSISKEESFTYMVDHLLSTLNDKHSI
>Mature_190_residues
ARIALTRDKIVQATIKLASEIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVYLQKELNHELTHAMVGLTPLAA
LRAYAESYKKFAEKYEAVYELINVIHQTNNGELEYLAKENIRLVRRSLENFNLSEEENFHISRMFRSTLHGFITLTQLGY
FRQSGSISKEESFTYMVDHLLSTLNDKHSI

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22009; Mature: 21878

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIALTRDKIVQATIKLASEIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LQKELNHELTHAMVGLTPLAALRAYAESYKKFAEKYEAVYELINVIHQTNNGELEYLAKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
NIRLVRRSLENFNLSEEENFHISRMFRSTLHGFITLTQLGYFRQSGSISKEESFTYMVDH
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLSTLNDKHSI
HHHHHHHCCCC
>Mature Secondary Structure 
ARIALTRDKIVQATIKLASEIGLSNVSFPRLAEYFGIKAPSLYNHFKNMEEVRVATAVY
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LQKELNHELTHAMVGLTPLAALRAYAESYKKFAEKYEAVYELINVIHQTNNGELEYLAKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
NIRLVRRSLENFNLSEEENFHISRMFRSTLHGFITLTQLGYFRQSGSISKEESFTYMVDH
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LLSTLNDKHSI
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]